GgaEX1035316 @ galGal4
Exon Skipping
Gene
ENSGALG00000029157 | MBNL3
Description
muscleblind-like 3 isoform 5 [Source:RefSeq peptide;Acc:NP_001156813]
Coordinates
chr4:3492365-3502765:-
Coord C1 exon
chr4:3502601-3502765
Coord A exon
chr4:3494022-3494222
Coord C2 exon
chr4:3492365-3492601
Length
201 bp
Sequences
Splice sites
3' ss Seq
TCTCCTTTTTCTGTGCACAGACG
3' ss Score
9.85
5' ss Seq
GAGGTATTT
5' ss Score
7.63
Exon sequences
Seq C1 exon
GGCCGGTGTACCCGAGAGAACTGCAAATATCTCCACCCTCCCCCGCACTTAAAAACACAACTTGAAATAAATGGACGCAACAACCTGATCCAGCAAAAGACGGCCGCAGCCATGTTTGCTCAGCAAATGCAGTTCATGCTACCAGGCACGCAGCTACAGCCAATC
Seq A exon
ACGACATTTCCTGTGACTCCATCGCTTGCAACAAGCCCCACAATGGCTTTTAGTCCCTACCTGAGTCACGTTTCTCCTGGGATGGGCTTGGTTCCTGCAGAGCTTTTACCAAATACTCCTGTCCTGGTTTCTGGAAATCCAACTGTTACGGTACCAGGAAGCTCTGCTGGGCAGAAACTGATGCGTACGGATAAACTGGAG
Seq C2 exon
GTTTGTCGAGAGTTTCAGCGTGGAAATTGCACACGTGGTGAGAACGACTGCCGCTATGCTCACCCGATAGATATTGCGATGATAGACACCAATGAAAATACTGTTACAGTTTGCATGGATTACATCAAAGGTCGATGCTCTAGGGAGAAATGCAAGTACTTTCATCCCCCTGCACACCTGCAAGCCAAAATCAAGGCAGCTCAACATCAGGTGAACCAGACAGCTGCAGCTGCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000029157_MULTIEX2-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF0064219=zf-CCCH=PU(4.0=1.8)
A:
PF0064219=zf-CCCH=PU(11.1=4.5)
C2:
PF0064219=zf-CCCH=PD(81.5=27.8)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACGCAACAACCTGATCC
R:
GCCTTGATTTTGGCTTGCAGG
Band lengths:
292-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]