BtaEX6009424 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019385 | SCN3A
Description
sodium channel, voltage gated, type III alpha subunit [Source:HGNC Symbol;Acc:HGNC:10590]
Coordinates
chr2:31274376-31277948:+
Coord C1 exon
chr2:31274376-31274498
Coord A exon
chr2:31276776-31277048
Coord C2 exon
chr2:31277895-31277948
Length
273 bp
Sequences
Splice sites
3' ss Seq
ATTCTTGCCTCCTCTTCTAGGTC
3' ss Score
11.62
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTTTCTTTGGTTAGCTTGGTAGCCAATGCTCTTGGCTACTCAGAACTTGGTGCCATCAAATCCCTACGGACATTAAGAGCTTTAAGACCACTGAGAGCTTTATCCCGGTTTGAAGGCATGAGG
Seq A exon
GTCGTTGTGAATGCTCTTGTTGGAGCAATTCCCTCCATCATGAATGTGCTGCTGGTTTGTCTCATCTTCTGGCTGATCTTTAGCATTATGGGTGTGAATTTGTTTGCTGGCAAGTTCTACCACTGTGTAAACACGACAACGGGTAACATGTTTGATGTTAGTGAAGTTAACAATTTGAGTGACTGTCAGGCTCTTGGCAAGAAAGCTCGGTGGAAAAATGTGAAAGTAAATTTCGATAATGTTGGCGCTGGCTATCTTGCACTGCTTCAAGTG
Seq C2 exon
GCAACATTTAAAGGCTGGATGGACATTATGTATGCAGCTGTTGATTCACGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019385-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.7=100)
A:
PF0052026=Ion_trans=FE(39.8=100)
C2:
PF0052026=Ion_trans=FE(7.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCTTGGCTACTCAGAACTTGG
R:
TCTCGTGAATCAACAGCTGCA
Band lengths:
149-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]