RnoEX6017127 @ rn6
Exon Skipping
Gene
ENSRNOG00000005007 | Scn3a
Description
sodium voltage-gated channel alpha subunit 3 [Source:RGD Symbol;Acc:3635]
Coordinates
chr3:51541242-51545976:-
Coord C1 exon
chr3:51545854-51545976
Coord A exon
chr3:51542121-51542393
Coord C2 exon
chr3:51541242-51541295
Length
273 bp
Sequences
Splice sites
3' ss Seq
TGCTCTCCTGTCCTCCACAGGTG
3' ss Score
13.04
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
Exon sequences
Seq C1 exon
GTTTCTTTGGTTAGCCTGGTAGCCAATGCTCTTGGTTACTCAGAACTTGGTGCCATCAAATCCCTACGGACACTGAGAGCTCTGAGGCCACTCCGAGCCTTATCCCGCTTTGAAGGCATGAGG
Seq A exon
GTGGTTGTGAATGCTCTTGTTGGTGCAATTCCCTCCATCATGAATGTGTTATTGGTGTGTCTCATCTTCTGGCTGATTTTTAGCATCATGGGTGTGAATCTGTTTGCTGGAAAGTTCTATCACTGTGTTAACACGACAACAGGCAACATGTTTGAAATAAAAGAAGTGAACAATTTCAGTGACTGTCAGGCTCTTGGCAAGCAAGCCCGGTGGAAGAATGTGAAAGTCAACTTTGACAACGTTGGGGCTGGCTACCTGGCATTGCTGCAAGTG
Seq C2 exon
GCCACATTCAAAGGCTGGATGGACATCATGTATGCAGCTGTTGATTCGCGGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005007-'35-32,'35-31,36-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.7=100)
A:
PF0052026=Ion_trans=FE(39.8=100)
C2:
PF0052026=Ion_trans=FE(7.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTTTGGTTAGCCTGGTAGCC
R:
CCGCGAATCAACAGCTGCATA
Band lengths:
172-445
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]