MmuEX6101695 @ mm10
Exon Skipping
Gene
ENSMUSG00000057182 | Scn3a
Description
sodium channel, voltage-gated, type III, alpha [Source:MGI Symbol;Acc:MGI:98249]
Coordinates
chr2:65469012-65472401:-
Coord C1 exon
chr2:65472279-65472401
Coord A exon
chr2:65469926-65470198
Coord C2 exon
chr2:65469012-65469065
Length
273 bp
Sequences
Splice sites
3' ss Seq
GCTCTCCTGTCTTCCCACAGGTG
3' ss Score
13.96
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
Exon sequences
Seq C1 exon
GTTTCTTTGGTTAGCCTGGTGGCCAACGCTCTTGGCTATTCAGAACTTGGTGCCATCAAATCCCTACGGACCCTGAGAGCTCTGAGGCCGCTCCGAGCCTTATCCCGCTTTGAAGGCATGAGG
Seq A exon
GTGGTTGTGAACGCTCTTGTTGGTGCAATCCCCTCCATCATGAATGTGCTACTGGTGTGCCTCATCTTCTGGTTAATCTTTAGTATCATGGGTGTGAATCTGTTTGCTGGAAAGTTCTATCACTGTGTTAACATGACAACGGGCAGCATGTTCGACATGAGTGAAGTCAACAATTTCAGCGACTGTCAGGCTCTTGGCAAGCAAGCCCGATGGAAGAATGTGAAAGTCAACTTTGACAATGTTGGGGCTGGCTACCTGGCATTGCTGCAAGTG
Seq C2 exon
GCCACATTCAAAGGCTGGATGGATATTATGTATGCAGCTGTGGATTCACGGGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057182-'40-35,'40-34,41-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=FE(17.7=100)
A:
PF0052026=Ion_trans=FE(39.8=100)
C2:
PF0052026=Ion_trans=FE(7.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCTTTGGTTAGCCTGGTGG
R:
CCGTGAATCCACAGCTGCATA
Band lengths:
174-447
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types