BtaEX6009748 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000026851 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:43679351-43686986:-
Coord C1 exon
chr2:43686912-43686986
Coord A exon
chr2:43682293-43682403
Coord C2 exon
chr2:43679351-43679500
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGTTGGCAATTTTATTTCAGGTG
3' ss Score
8.11
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTTTGTGGAGAAAAACAACGCTTTGAGAAGTTGATGGAACATTTCAGGAATGAGGACAATAACATAGATTTTATG
Seq A exon
GTGGCCTCTATGCAGTTTATTAATATTGTAGTCCACTCAGTAGAAGACATGAATTTCAGAGTTCACCTCCAATATGAATTTACCAAATTAGGCCTGGATGAATACTTGGAT
Seq C2 exon
AAGCTGAAGCACACGGAGAGTGACAAATTGCAGGTACAGATTCAGGCTTACCTGGACAACGTGTTTGATGTGGGAGCTCTTCTGGAAGATGCCGAAACCAAGAATGCAGCCTTGGAGAGGGTGGAGGAACTGGAAGAAAACATCTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000026851-'35-30,'35-28,36-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(11.7=100)
A:
PF0636711=Drf_FH3=FE(17.6=100)
C2:
PF0636711=Drf_FH3=FE(23.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTGGAGAAAAACAACGCT
R:
ATGTTTTCTTCCAGTTCCTCCACC
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]