HsaEX6016044 @ hg19
Exon Skipping
Gene
ENSG00000157827 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:18267]
Coordinates
chr2:153463853-153471514:+
Coord C1 exon
chr2:153463853-153463927
Coord A exon
chr2:153468009-153468119
Coord C2 exon
chr2:153471365-153471514
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCTTGACAATTTCATTTCAGGTG
3' ss Score
8.32
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTTGTGGAGAAAAACAGCGCTTTGAGAAGTTGATGGAACATTTCAGGAATGAAGACAATAACATAGATTTTATG
Seq A exon
GTGGCTTCTATGCAGTTTATTAATATTGTAGTCCATTCAGTAGAAGATATGAATTTCAGAGTTCACCTGCAGTATGAATTTACCAAATTAGGCCTGGACGAATACTTGGAC
Seq C2 exon
AAGCTGAAACACACTGAGAGTGACAAGCTTCAAGTCCAGATCCAGGCTTACCTGGACAATGTTTTTGATGTAGGAGCTCTACTGGAAGATGCTGAAACTAAGAATGCTGCCTTGGAGAGGGTGGAAGAACTGGAAGAAAACATTTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827-'14-18,'14-16,17-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(11.7=100),PF061486=COG2=PU(11.1=84.0)
A:
PF0636711=Drf_FH3=FE(17.6=100),PF139351=Ead_Ea22=PU(17.4=73.0),PF061486=COG2=FE(18.9=100)
C2:
PF0636711=Drf_FH3=FE(23.9=100),PF139351=Ead_Ea22=FE(31.6=100),PF051307=FlgN=PU(47.3=86.0),PF061486=COG2=FE(25.8=100),PF053358=DUF745=PU(19.4=38.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTGGAGAAAAACAGCGCT
R:
ATGTTTTCTTCCAGTTCTTCCACCC
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)