MmuEX6101348 @ mm10
Exon Skipping
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:53097271-53103806:+
Coord C1 exon
chr2:53097271-53097345
Coord A exon
chr2:53101426-53101536
Coord C2 exon
chr2:53103657-53103806
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTTTGAAAATTTCATTTCAGGTG
3' ss Score
8.44
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTCTGCGGAGAAAAGCAGCGTTTTGAGAAGCTGATGGAACATTTCAGGAATGAAGATAATAACATAGATTTTATG
Seq A exon
GTGGCCTCTATGCAGTTTATTAACATTGTAGTCCATTCAGTAGAAGACATGAACTTCAGAGTTCATCTACAATATGAATTCACCAAATTAGGCCTGGATGAATACTTGGAT
Seq C2 exon
AAGCTGAAACACACAGAGAGCGACAAGCTGCAAGTACAGATTCAGGCTTACCTGGACAATGTGTTTGATGTGGGAGCTCTGTTGGAAGACGCAGAAACCAAGAATGCTGCCTTGGAGCGGGTGGAGGAGCTGGAAGAAAACATCTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053-'27-27,'27-18,32-27=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(11.7=100)
A:
PF0636711=Drf_FH3=FE(17.6=100)
C2:
PF0636711=Drf_FH3=FE(23.9=100)
Main Skipping Isoform:
ENSMUST00000049483fB10142
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGAAAAGCAGCGTTTTG
R:
TGAGAGATGTTTTCTTCCAGCTCC
Band lengths:
220-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types