DreEX6034953 @ danRer10
Exon Skipping
Gene
ENSDARG00000012586 | fmnl2a
Description
formin-like 2a [Source:ZFIN;Acc:ZDB-GENE-081105-70]
Coordinates
chr9:4801473-4805418:-
Coord C1 exon
chr9:4805344-4805418
Coord A exon
chr9:4801705-4801815
Coord C2 exon
chr9:4801473-4801622
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGCTATATTTTGTCTCACAGGTC
3' ss Score
11.03
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGTGTTTAGAAGAACAGCGCTTCGAGAAGCTCATGGAGTACTTCAAGAATGAAGACAATAACATTGACTTCATG
Seq A exon
GTCGCCTGCATGCAGTTTATAAACATCGTGGTTCATTCTGTGGAAGACATGAATTTTCGAGTGCACTTACAGTATGACTTCACAAAACTAGGTCTGGATGAATATCTGGAC
Seq C2 exon
AAGCTGAAGCACACCGAGAGCGATAAGCTGCATGTGCAGATTCAAGCATACCTGGATAACGTGTTTGATGTCGGAGCTCTGTTAGAGGACGCAGAAACCAAAAACGCAGCGCTGGAGAGGGTGGAGGAACTAGAGGAGAACATGTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012586-'13-13,'13-12,14-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.130
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(11.7=100),PF061486=COG2=PU(12.0=92.0)
A:
PF0636711=Drf_FH3=FE(22.0=100),PF138701=DUF4201=PU(16.0=45.9)
C2:
PF0636711=Drf_FH3=FE(29.9=100),PF138701=DUF4201=FE(46.2=100),PF051307=FlgN=PU(54.4=86.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGTTTAGAAGAACAGCGCT
R:
ATGTTCTCCTCTAGTTCCTCCACC
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]