GgaEX6043322 @ galGal4
Exon Skipping
Gene
ENSGALG00000012525 | FMNL2
Description
formin-like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr7:35023711-35027918:+
Coord C1 exon
chr7:35023711-35023785
Coord A exon
chr7:35027449-35027559
Coord C2 exon
chr7:35027769-35027918
Length
111 bp
Sequences
Splice sites
3' ss Seq
TGTGGTGGCTCCTCTTGCAGGTG
3' ss Score
10.58
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTGTGTGGAGAGAAACAGCGCTTTGAGAAGCTGATGGAGCACTTCCGAAACGAGGACAACAACATAGACTTCATG
Seq A exon
GTGGCTTGCATGCAGTTCATCAACATCGTTGTGCACTCGGTGGAGGACATGAACTTCCGGGTCCATCTGCAATACGAATTTACAAAGCTGGGCCTGGACGAGTATTTGGAC
Seq C2 exon
AAACTGAAACACACAGAGAGTGACAAACTGCAGGTGCAAATCCAAGCGTATCTGGATAACGTTTTTGACGTGGGAGCATTACTGGAGGATGCTGAAACCAAGAATGCAGCCTTGGAAAGAGTTGAAGAACTGGAAGAAAACATTTCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012525-'18-15,'18-14,20-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(11.7=100)
A:
PF0636711=Drf_FH3=FE(17.6=100)
C2:
PF0636711=Drf_FH3=FE(23.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGGAGAGAAACAGCGCTT
R:
GTGGGAAATGTTTTCTTCCAGT
Band lengths:
223-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]