MmuEX6101348 @ mm9
Exon Skipping
Gene
ENSMUSG00000036053 | Fmnl2
Description
formin-like 2 [Source:MGI Symbol;Acc:MGI:1918659]
Coordinates
chr2:52956305-52962840:+
Coord C1 exon
chr2:52956305-52956379
Coord A exon
chr2:52960460-52960570
Coord C2 exon
chr2:52962691-52962840
Length
111 bp
Sequences
Splice sites
3' ss Seq
CTTTGAAAATTTCATTTCAGGTG
3' ss Score
8.44
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTCTGCGGAGAAAAGCAGCGTTTTGAGAAGCTGATGGAACATTTCAGGAATGAAGATAATAACATAGATTTTATG
Seq A exon
GTGGCCTCTATGCAGTTTATTAACATTGTAGTCCATTCAGTAGAAGACATGAACTTCAGAGTTCATCTACAATATGAATTCACCAAATTAGGCCTGGATGAATACTTGGAT
Seq C2 exon
AAGCTGAAACACACAGAGAGCGACAAGCTGCAAGTACAGATTCAGGCTTACCTGGACAATGTGTTTGATGTGGGAGCTCTGTTGGAAGACGCAGAAACCAAGAATGCTGCCTTGGAGCGGGTGGAGGAGCTGGAAGAAAACATCTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036053-'16-11,'16-10,17-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(11.7=100),PF061486=COG2=PU(11.1=84.0)
A:
PF0636711=Drf_FH3=FE(17.6=100),PF061486=COG2=FE(18.9=100)
C2:
PF0636711=Drf_FH3=FE(23.9=100),PF051307=FlgN=PU(47.3=86.0),PF061486=COG2=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGAAAAGCAGCGTTTTG
R:
TGAGAGATGTTTTCTTCCAGCTCC
Band lengths:
220-331
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: