RnoEX0036392 @ rn6
Exon Skipping
Gene
ENSRNOG00000055567 | Fmnl2
Description
formin-like 2 [Source:RGD Symbol;Acc:1560248]
Coordinates
chr3:38640568-38647322:+
Coord C1 exon
chr3:38640568-38640642
Coord A exon
chr3:38645073-38645183
Coord C2 exon
chr3:38647173-38647322
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCTTGAAAATTTCATTTCAGGTG
3' ss Score
7.98
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
GTCTGCGGAGAAAAGCAGCGTTTTGAGAAGCTGATGGAACATTTCAGGAATGAAGATAATAACATAGATTTTATG
Seq A exon
GTGGCCTCTATGCAGTTTATTAATATTGTAGTCCATTCGGTAGAAGACATGAACTTCAGAGTTCATCTCCAATATGAATTTACCAAATTAGGCCTGGATGAATACTTGGAT
Seq C2 exon
AAGCTGAAACACACAGAAAGTGACAAGCTGCAAGTACAGATCCAGGCTTACCTGGACAACGTGTTCGACGTGGGAGCTCTGTTGGAAGATGCTGAAACCAAGAATGCTGCCTTGGAGCGGGTGGAGGAACTGGAAGAAAACATCTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055567-'11-12,'11-11,12-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(11.7=100),PF061486=COG2=PU(11.1=84.0)
A:
PF0636711=Drf_FH3=FE(17.6=100),PF061486=COG2=FE(18.9=100)
C2:
PF0636711=Drf_FH3=FE(23.9=100),PF061486=COG2=FE(25.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAGAAAAGCAGCGTTTTG
R:
AGAGATGTTTTCTTCCAGTTCCTCC
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]