HsaEX6016044 @ hg38
Exon Skipping
Gene
ENSG00000157827 | FMNL2
Description
formin like 2 [Source:HGNC Symbol;Acc:HGNC:18267]
Coordinates
chr2:152607339-152615000:+
Coord C1 exon
chr2:152607339-152607413
Coord A exon
chr2:152611495-152611605
Coord C2 exon
chr2:152614851-152615000
Length
111 bp
Sequences
Splice sites
3' ss Seq
CCTTGACAATTTCATTTCAGGTG
3' ss Score
8.32
5' ss Seq
GACGTGAGT
5' ss Score
9.22
Exon sequences
Seq C1 exon
GTTTGTGGAGAAAAACAGCGCTTTGAGAAGTTGATGGAACATTTCAGGAATGAAGACAATAACATAGATTTTATG
Seq A exon
GTGGCTTCTATGCAGTTTATTAATATTGTAGTCCATTCAGTAGAAGATATGAATTTCAGAGTTCACCTGCAGTATGAATTTACCAAATTAGGCCTGGACGAATACTTGGAC
Seq C2 exon
AAGCTGAAACACACTGAGAGTGACAAGCTTCAAGTCCAGATCCAGGCTTACCTGGACAATGTTTTTGATGTAGGAGCTCTACTGGAAGATGCTGAAACTAAGAATGCTGCCTTGGAGAGGGTGGAAGAACTGGAAGAAAACATTTCTCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000157827_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.080
Domain overlap (PFAM):
C1:
PF0636711=Drf_FH3=FE(11.7=100)
A:
PF0636711=Drf_FH3=FE(17.6=100)
C2:
PF0636711=Drf_FH3=FE(23.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGTGGAGAAAAACAGCGCT
R:
ATGTTTTCTTCCAGTTCTTCCACCC
Band lengths:
218-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains