BtaEX6009872 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021020 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr2:44768676-44774363:-
Coord C1 exon
chr2:44774309-44774363
Coord A exon
chr2:44770725-44773943
Coord C2 exon
chr2:44768676-44768822
Length
3219 bp
Sequences
Splice sites
3' ss Seq
ATGTGTACATTTTTGTGCAGGAG
3' ss Score
6.76
5' ss Seq
AAGGTAGGG
5' ss Score
8.76
Exon sequences
Seq C1 exon
GGAAATTTCTACTTTAATTGAAAAATCAAAAGAAGACTCCAAGATGATATTTAAG
Seq A exon
GAGGAACAAAAGGAGAATGACATTGTCGTTCCTCAACATGTCATGGAAAACTGCGGTATGGATGAACATCTTGAAAAGGCTTCCCTTTTGAATAATGAGTGTGGTTCTATTGAGGAAACCAGTCCAAAAATACTGAGCAGTAATAATGATGCCAGAAAAAAAGCTTTAATTGCTTCAAATAAACCAACAGAATGTGCATCTACTACAGAAAATCCATCTGGTGTCAGCAGTAGCTCGGTTTCTATTGCCACCATTTCTGGAGCTCCCTTACAGCCTACAAGTCGAAGGCAATCCTTTATTACTTTGGAAAAGTTTGATGGTTCAGAAAATAGACCTTTTAGTCCATCACCCTTGAATAATATGTCATCAACTGTAATAGTGAAAAGTAACCAGGAAGGCATGGGTAAAACAGATAATCCATCAAAAGCAAAGAAGAGAGAAGTGGCTCTTTCCAAATCTGACTCTGAAAAAATAACACATGGGACTAAGAGATCAAGCCGAAGGTCGAGTAAATCTGAACCAATAGGGAGTAAAAAGTCTAAACCCTTAATGAGATCTGAACAAGAGAAAAGTACTCAAGAATCTGTTGATGGCACAGTAGCCTTAGAAAATAACCCACCTGGCTTGCTTAATCAGACAGAATGTGTGTTAGATAATCAGGTTCATCTCTCTGAATCTACAGTGGAGTTTGAGGATACAATGCTTGAATCAACAGTGGAGAATACTGTATTAGAAAACAATACTGTAGAAGAGAGAACCTTAGAAGTTAACTTGGAATCCAAAGAAAACACACCCCCAGCCATAATAACGGATCAGACAGTAAATGAGGATAGTCATATTCAGGTAACTCCAAATCAGAAAACCCTTAGGCGATCTTTAAGGCGACGTTCAGAAACAGCAGAACCAACCACTGATAGCCAAGATAAAGAAAATAATCATCAAAAAAGGGAAAGACGTAAAGAAGAAGAAAAGACTCCGCAGAAGAGTCCGTTACATGTAAAAGATGATGTTTTACCTAAGCAAAAATTGATTTCTGAACAAAGTGTACAGGGAAACTTAGTTGACAAAGGAAATAATTTACATGAGAAGGCTTTTGGGGAGACCAGTGCTAATGCTGAAATTGATGAAAATAGAAGAAAGCCAGATCTTGAGAATACTAAATCTGAAGGAGATGGTGTGCCGGACATTGCAGATAAATCCTCTGAGAAACCAGTAAGGGGACGAACACGATACCAAACAAGAAGAGCATCCCAGGGTTTACTTTCCAGCATTGAAAACTCAGAATCTGATAGTTCTGAGGCAAAAGAAGAAGGTTCTAAAAAGAAAAGATCTGGAAAATGGAAGAACAAAAGCAGTGACAATGTTGACATGGAAGATCAAGAAGAGAAAATGGTAAAACAGGAATGTATAAAAATTGAAAATCAGGCACATGATTATAAAGGGAATCCTGAAGTAGACAAAGATATAAAATCTCAAATCTGTGAAAAAGGAGATGAAAGTACTACTGTAAGTCTTCAAGATTCTACCGTATCTCCAGATTTATTACAAGTTTATGATGATGTATTGAATACTTCTGAGGGAGAAAGTAAAAGTAACAAAGATGCAGACCATTCCTTTTCAAATCCTTCTGTACCAGAATCAAATCTAAGGACTAGAAATGCCAGTAAGAGGTTACATAAGCGAGATTCTATAGAAAATAGCATGGGGGAATCCTCAAAAATAGGGACATCAGACATTTCTTTGCTTTCTGAAAAAACTCTTCAGACAGTAGAATGCCAGCACAAGAGAAGTAGGAGGGTGAGGCGATCTAAAGGTTGTGATTGTTGTGGAGAAAAATCACAGTCTCAGGAAAAGTCATTTACTGGGTTAAAGGATACAGAAAATTACGATGTAAAAGTCAGTGAAACAAAAAAGACAGATGGGGAAACACCTGTATCTATTTCAGAAACTTCGAAAGCTGATCTGTCCTCGGAGGTTAAACTTTTAGATGAGCATCATAGTGTGAATTTTCATTTGGATCTCAAGGAAGAGAATGATACTACTAATGATTCATTAATTATATCTGAAACTGAGTTAAAAGAAAATACTACTCAAAGCTTTCTTCCTTCTGAAATGGTAAAATTTAAAGAAACTTCTCGTAGGGATTCTGAGGAAGCAATATCTCTAGAAACCCAGGAGCCATCTAATAAGAAATGTAAAACTGTTGACCCACATTTAGATGTTTCCAAAGATATTTCACTGAAATGTTTTTCTTTGGAGACTAAAGAAGAAAAGTCAGAGGCCACTTCAAAAGAGAAATTGAGTACAGAGAACATTGTTATTGTTGAATCAAATGCAGAATCAAATCCAGAAGTAGATGCTATGGAATTGAATGTAGAAAATGATCAGTCTGAAGCTGGCTTCTCTGAACAAAAGAATGTCAAAACTGGTATTCCAGGGAAAGAAGTAACAGAGGAAAACAGTGAAAGAATGGATACACCTGAAAAACTGAAAGCCAATGAAGCAGTAACTGAGGAATTTAATTCAGCTACTGATTATTCGGATACTCCGACATCTGTAAAAGTGAATGCTCAGGTAGAGATCTCTGAACAAATAGCGGTTGGGGAGCTAGGTGGAGGAAGTGATGAATCTGATCCAGGCTCATCTGAAGAAATGAACGCTGAAATGAAAAATTGTGAAAAAACAGCGGTTTGTGAGGTGACTACTGAATCTGACCACGTCACTGAAACCGAAGACGAAGATGTAACTACCACGGCTTCTCTGCCTATAGAAGTTGAAACAAAGGAATTAGATGTAGAAGTCAATAACTTTGTTCCCGACACACTTGAGATGATCACTGAAGAAGGAAAGGTTGACCCTAACAAAACTGAAACGAATACTGAACCTAATAAATTGGAGGAAACACAGTTAGATGACAATCAGATGGTAGTGGAAAGTAATGAAACTTTACCGGAAGTTCACCATACTTCAGAGAAAGTAGAGGAGATAGCACAACCTCTGACATCTGAAACAGATATTTCTGGACTAATATCAGAAGACAGTAATACATCTCCTCAAAAATCGAAGGATATTGATCCTTTACTCATGTCAGCAAACGAGAGTCCTAGTGGCATGCACACACGTTGTGTGTGGTCTCCTTTGGCTTCTCCATCCACCAGCATTTTAAAGAGAGGACTAAAAAGACCCCAAGAAGATGAAATCTCGTCACCTGTCCACAAG
Seq C2 exon
GTTCGCCGTGTCTCCTTTGCAGATCCTATATACCAAGCAGGATTGGCAGATGACATTGATAGGCGATGCTCTATTGTTAGGTGCCATTCTTCAAATAGTTCTCTCATGGTAAAAAGTGTTAAAACTTCACCTACTGTGCAATCTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021020-'36-38,'36-36,38-38=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.684 A=0.922 C2=0.214
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]