DreEX6036108 @ danRer10
Exon Skipping
Gene
ENSDARG00000062650 | rif1
Description
replication timing regulatory factor 1 [Source:ZFIN;Acc:ZDB-GENE-030131-3406]
Coordinates
chr9:22985971-22989305:+
Coord C1 exon
chr9:22985971-22986031
Coord A exon
chr9:22986140-22989070
Coord C2 exon
chr9:22989183-22989305
Length
2931 bp
Sequences
Splice sites
3' ss Seq
TGTCATTCTCCCCAAAAAAGGAG
3' ss Score
4.38
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GGACACATTGCCTAAAGGTGAGAAGGATCATCCTGTGGAAGCGGCTAGTGTTCAACTGAGG
Seq A exon
GAGGTTGCCTCAAATGAAGTACCAACCACAGATGTTAAAGTCCAAAAAGTCACCAGTTCTGATATAGAAACTCCAGATAAAGCTACGCCGAATAAAGATCAAACTTTGGAGATGGATCAATCACCATCTACTGGTGTCTCAGTTGATGTGAGTGGGCTTGAGAAAAGCGCATTGGAGGGGACAAGTCCTAATATTTCAAGTTCATCTGATGTGGTATCTGGCACACCTCCTAAACCTAACAGCAGGCGTCAGTCATTTATAACCTTAGAAAAATATGCTGAAGGGAAATCGACAAGTCCTGCAAGTCCTGCATTTACAGGTACGCTCACCCGGAGATCAAGAAGACTGGAGGCTTCACAGGCATCAACATCAAATCAAAATGATTCTCAACCTCAGATTAAAAAAGTGGATTCTCAGGAATCTCAAAAGATGAGCAGCATTGACATGTCCATTCAAAATGAGCATGCTAGCATGGAAGTAAAAGATGAGAAGTCAGTGGGAGCTAATCCATGTGAAGGTACAGATGAGGAAGATGTTGTTCCAGATACCCAAACCCAAGTATCTGGTGACACATTGGGTATTAAAAGCAGTCCTGTGTCTAAAGCCCATGCGGAGGCACAGGGGACTCCTGAAAAAAATTCACAGAGTCCTAATGATTCTCTAGCTAGTCAAGAACCAAGAAGGTCTGGCAGAAGGCGAAGTAAACCTGTTCGTCCAGGGCAAGATGCAGAGGAAATAAAAAGTAAATCTCAAGAACAAGCCAGTCAACCTGCAGACTCTGCGATAATAAACTCACAAAAGCCCCTTCTTGCTTCACCTAGTAGTACTTTGACTGGAAGAAGGAAAAAAAAGGTTGAGACCAATAAAATGGAAGACCAGCTGAACAATGAAGAAATGAAAGGAGATCTCAGCCAAAGCGATTCACAGATTTCCGCTGCTGACCCTCCACAGACAGTAGGTGTGCATGCCAATAAAGACTTAAGCCAGACTGAGTTATCTCCGAAGAGTTCTCCTGTAACCCAGTCAAATAGCCAAAGCAAAGAGAGACTGCCAGCTCTCTGCGAGTCTGAGAGTATGTCGTTAGGTAGACAGGAGACAAAAACACAACTTGAAGAATCCACAGAAAAGGAGACAAATAATGACTCTCAAAACGCTTCATCTGCAGCGAGACCGAAGCATATACAGTCTACCACGTCTGACTCCGAGTCGGATAGCCAGCAAATTGTCCGTAAACGAAGATCGAGGAGATCTGAAACTAAGTTACTGGAGATATCTGGTGTGCCGATCAAAGAAGACTTGAATCAGACAGACTCCCAAACTCCAACAGGAGTGAAGGGAAGAGCTATGAGGAGGAGAACCGTAGAAGGTGCAGAGTCTAGTAAAGATTCCACATCAGCGGTAAATACAGAGGAGTTAAGTGCAGGCAAGGAGTCATCACAAGAGCTTGGTAGATACAGAACTCGACGTTCTAGGGGTTTGTTGTCTCCTGAGAGTATGGAGTCTGAAAACTCTGATAGCCGAGAAGATGGGGCAAGGCCTAAAAAGAGGCTGCGAAAACCACCATCAACAGAGGTGTTACCTGTTGCTTCAGAACCCAAAGTTATTGAGATGGTACCAGAAAAGGACGATGTTCAGTCAGAGGTTTTAATGGAGACGTCAAAGGATGAGGCAGATCCTGAAAATATCTCGAATACTTCAGTCAGTGAAACCAAAGAACTTGAGCAAAAGAATAAAGAGGAAGTCCCTGCCCCTTGTGATGCACCACATGAACAGATTATCACGGAAAAAGCAGCATCAAACAACAAAATTGACACTGACTTAACTGATACAGACGAAAAAGAAACCGTCAAGGCAGAGGGTGAAGAAGCTAATGAATCTTCGCAAACTGGATCAGAAGATTTTAAAAAGACAGATGTTTTGCATAAATGCCCACATACAAAGGGACGGGGCCGTGCACGTAGACGATCTAAAAACTGCAACTGCTTTTCCAACAACCGTGATGTGTTTTCACAGGACAGTGACTTCCAAGAATCACAAGATCTAAAAAATGAACAGGTTCCACTTGCTGCCAACATCTTGAACTCTCAACCTGATCAGTCAAGCCCATCAACTGCATCAGAAGAAAACAAAAGCTCAGCAATTGAAGAAGTCCCTGTTGCGGATGTTCCATCACTTTCAGCCTTATCAGCTGATCTCCCATCTGAGGTTTCACCTTCTGAAAGTCCCATTACAAAACTTGGGGTAATTGTTTCTCAGCTACCAGAAGTGGAGAAAGAAGCACAGCCTGGATCATCCAAACCAATGAAGGATTCGAGCAAGGAGCTTGTAGAAGAAGTGAATCGATTAAGTTCTGGATCCACAGGTGGTCAAAAGCACAAAGGAGAAAATAGATTAGAAAACACTTCAGTAAGCCAAGAACCTGTCCAGAGTTCAACACCTCAAGACACGTCTCCAAGTCAAGGTCGTCCAGTGGACGATGCACCAATATGCCAGGAGCAGTTAGAGTCTTCTCATGTCCAGCAGGAAGATGCAGTTAACCCAGCAGTGATGGAAAGAGAAGACCTTGCTGTGTCAGAGCAGAGACAAGAGAAGGCTGTGTTGTCTGAAGAGTTAGATGGAAAAGGTTTGCTTGACAAGGAAACTACTCTTGTTGAAAAGGAAGAAGAGATGCAGGTTAATAACCAGGATCTTCCTGTGGATGTCCAAGAAGAGTTACCTGTAGTGTCCCAGAGTAGCACATCTGAAGCCTGCTTGGATTCTCCACCCAAGCCAAAACTGTTAAGCGCACTCAGTGGTGAACTAGAGCCTGGCCAGAGTCCAACTAGAAGTCGGTCTCGAGTCTGGTCACCATCTGCTTCTCCGTCTACCAGTATTCTGAAGAAGGGTCAGAAGAGAGCATGTGAAGAGGAGACTCCATCCCCCATTCCCAAG
Seq C2 exon
TCACGTCGAGTGTCTTTTGCAACTCCAATTTACCAGCAAGAACTGGCTGATGACATTGATCGTCGTAGTCCGGTTATTCGCACAAGTTCACCTAGGTCAAAAGTCTTGAGTGGACAGTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062650-'36-46,'36-44,37-46=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.989 C2=0.805
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]