GgaEX0028892 @ galGal3
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
NA
Coordinates
chr7:36792425-36796990:+
Coord C1 exon
chr7:36792425-36792476
Coord A exon
chr7:36793587-36795824
Coord C2 exon
chr7:36796853-36796990
Length
2238 bp
Sequences
Splice sites
3' ss Seq
ATTTGCTGTTTTTGGTACAGGAA
3' ss Score
9.13
5' ss Seq
GAGGTTGAT
5' ss Score
1.52
Exon sequences
Seq C1 exon
GGAGAAGTCACCTTTAGAAAATGCAAAAGAAGATTTTAAAAACAATCCTCAG
Seq A exon
GAAGAAAATGGAAAGAGTGAAAGCTGTATTGCTGATTCAGATGGAAACACAGGGGACTGCAAAGTGGATAATCCTCTGGAGGATGTGAAAGAGAAGTCTGCTTATCACATAGAGAAGAATTCAAACAGCGAAGAAGAGTCGTCAAGGGGTGATAGAACTGGAATCATTGGAGAGGAGTCATCAGTTGGAGAGGCATTAGAAAAAAGTGGTACAGAAACAGCTTCAAAGGAGTCCTTAGTAGGGAATGAAAACACTTCAGCTATCAGCTGCAGTTCTACTTCAAGTGATGTGATCTGTGGAACGCCACAGCCTGCGAGCCGACGGCAATCTTTTATTACACTGGAGAAGTTTGATAGTTCAGAGAGCAGGCCCTTCAGCCCTTCAGCTTTAAACAGTGTGTCAGAGGTGTCTCAAAGTGCTCCTGTGCCGGATAAACAGGGAAATATAAACGTATGCAAGACTGGTCGTAAGCCAGGGAAGTCTGGGGAAGAGAGTAGAAAGTCTTCACAATCCGAGCAGATTTCTGCTGCAAAACGAAGGCTGACGCGCAGGCAGAGTAAAATGGAGCAGCAAGGAAATCAGCAGGCCAAGCTGGTAACTAACTCAGAACAAGAAAAAGGTGCTCAGGAGTCTTTCGTTTCCAATAGCGTGGAAAATAGTCCCGAATCACCTTGCTCAATGGAGGACACGGAGCGTGTTCTCACTGCTCAGCCCCAACCTGTCAGCTCTCCAGAACCAGACATCAAAAAAGCTGAAGCTGTAATGGCAGAAATAGAAAAGGTCCGGGCGTTTGAAATGGATTCTAAAGAAAATACACCCCCGAAGACGGCCGTGTCCTCCGAGCAGGTAATGGGTGATGGCAGTCAGGGCCCACATGCATCTCTTAGTCAGAAAACACTGAGACGTTCTTCGAGACGGCGGTCAGAAAATGCAGAGATGGCAGCAGGTAGTCAGGATAAGGAGGATGGCTACCAAAAAAAAGACAAACGTAAAGAAGATGAAAAAGCCCTGCAGAAGAAGGTGCCCCAGACTAAAGAGGATGCATCCCAGAAGCAGAAAGCAGTCTGTGGGAAAGCTTCAGAACATGCCATCAAAAAAGAAAGCAGCCTACCTGAGAGAAGTGCTGCAGAGGACTTGGGCTCAAAGGAGCCTCCTGCTGCAAAGGGAGCTGATGAGGAAGCAAACAGAAGTGCTGGGAAGCCAGAAGACACATTAAAGAGTGACTCGGAAGGTCAGGACTGTAGCTCAGATACAGTAAGTGAGAAGAAAAGGGAGCGGCCACGATACCACACCAGGAGGAGTTCACAAGGATTGCTTTCCAGCATAGAAAATGCAGAGGCTGATGGCTCTGAGACCAAGAAGGAAAGTTTAAAGAAAAAATCTGGAAAAACAAAAAATAAAAGTGATTCTCTTGAAGGTAAACGGAAGGATGTCCAGCCAGAAAGCCAAAGCCATGGGGTGTCTTCTCAAGTAGATGAAAGTAAGAATCTGTCGGGGATGAATGAAAGTGAATTAAGCAGTGAAGTCAGCACAGATGCAGCACTGATGTCTGCACCATCTGATGTGAAAAATCAAGTGCTGCTTGCAGGTGCTGATGAAGCTGAGGGGTCTGCCAGCTCAAGGACTTCTCCCAGTACTCAGAATGTGAGCGTGGAACAAAGCAAAGCTGGTGTGTTGCCAGAATCTTTCAGTGACCCACGTGTGTCTGATGAAGTTTTGAAAGGAGATGAAAATAAATGCATTGAAAAGCAAAGCTCTGTGGAACAGCATTCGAGTGTTCAGCCTGAGAACGTACAAGGAGCAAACACTTCAGGTAGTGACCTCTCCTCTTTGCAAATGCAGGACTGTCAGCACAAGAGAAGCAAAAGGGTGAGAAAAGCCAAGAGCTGCGACTGCTGCTCGAAAAGAGTGAAGCAGCAAACATCACTCAGTGAGTCAAAAAGTGAGGATCCTCGTGAGCTGATTGAGCCTCAGGCCACACCAGTGCAGATGGCTGTCAGTACAGCAGAGGTGTCTGGCAGCTCGAATCTGGAGGAGAGCTTGTCCATCACACCTTGTGCCATGAGCACACCGCTGCCTCCTGCTAAGGAGTCCGGTATGTTGAGCTTGGAAAGAGAGAGAACGGGTGAAGACAACCTGCAAGGAAATTCTGGTGTTATGAAGGAAGAGGCAGAGAATCCAGCACACACAGCAGGTGAAGTCAGTGATCCTGTAGTGGAAATAAAAGTGAAAGAAGAG
Seq C2 exon
ATTCGTCGGGTCTCTTTTGCCAATCCCATCTATCAGGAAGGACTGGCTGACGACATAGACAGGAGAAGTCCTGTCATTAGATCCCATTCTTCACCGTCTTCACGAAGTCTTAAAATCTTATCTAATATTCAGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484_MULTIEX1-19/27=18-20
Average complexity
S*
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.970 C2=0.457
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]