GgaEX0028892 @ galGal4
Exon Skipping
Gene
ENSGALG00000012484 | RIF1
Description
replication timing regulatory factor 1 [Source:HGNC Symbol;Acc:HGNC:23207]
Coordinates
chr7:34665876-34670441:+
Coord C1 exon
chr7:34665876-34665927
Coord A exon
chr7:34667038-34669812
Coord C2 exon
chr7:34670304-34670441
Length
2775 bp
Sequences
Splice sites
3' ss Seq
ATTTGCTGTTTTTGGTACAGGAA
3' ss Score
9.13
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
GGAGAAGTCACCTTTAGAAAATGCAAAAGAAGATTTTAAAAACAATCCTCAG
Seq A exon
GAAGAAAATGGAAAGAGTGAAAGCTGTATTGCTGATTCAGATGGAAACACAGGGGACTGCAAAGTGGATAATCCTCTGGAGGATGTGAAAGAGAAGTCTGCTTATCACATAGAGAAGAATTCAAACAGCGAAGAAGAGTCGTCAAGGGGTGATAGAACTGGAATCATTGGAGAGGAGTCATCAGTTGGAGAGGCATTAGAAAAAAGTGGTACAGAAACAGCTTCAAAGGAGTCCTTAGTAGGGAATGAAAACACTTCAGCTATCAGCTGCAGTTCTACTTCAAGTGATGTGATCTGTGGAACGCCACAGCCTGCGAGCCGACGGCAATCTTTTATTACACTGGAGAAGTTTGATAGTTCAGAGAGCAGGCCCTTCAGCCCTTCAGCTTTAAACAGTGTGTCAGAGGTGTCTCAAAGTGCTCCTGTGCCGGATAAACAGGGAAATATAAACGTATGCAAGACTGGTCGTAAGCCAGGGAAGTCTGGGGAAGAGAGTAGAAAGTCTTCACAATCCGAGCAGATTTCTGCTGCAAAACGAAGGCTGACGCGCAGGCAGAGTAAAATGGAGCAGCAAGGAAATCAGCAGGCCAAGCTGGTAACTAACTCAGAACAAGAAAAAGGTGCTCAGGAGTCTTTCGTTTCCAATAGCGTGGAAAATAGTCCCGAATCACCTTGCTCAATGGAGGACACGGAGCGTGTTCTCACTGCTCAGCCCCAACCTGTCAGCTCTCCAGAACCAGACATCAAAAAAGCTGAAGCTGTAATGGCAGAAATAGAAAAGGTCCGGGCGTTTGAAATGGATTCTAAAGAAAATACACCCCCGAAGACGGCCGTGTCCTCCGAGCAGGTAATGGGTGATGGCAGTCAGGGCCCACATGCATCTCTTAGTCAGAAAACACTGAGACGTTCTTCGAGACGGCGGTCAGAAAATGCAGAGATGGCAGCAGGTAGTCAGGATAAGGAGGATGGCTACCAAAAAAAAGACAAACGTAAAGAAGATGAAAAAGCCCTGCAGAAGAAGGTGCCCCAGACTAAAGAGGATGCATCCCAGAAGCAGAAAGCAGTCTGTGGGAAAGCTTCAGAACATGCCATCAAAAAAGAAAGCAGCCTACCTGAGAGAAGTGCTGCAGAGGACTTGGGCTCAAAGGAGCCTCCTGCTGCAAAGGGAGCTGATGAGGAAGCAAACAGAAGTGCTGGGAAGCCAGAAGACACATTAAAGAGTGACTCGGAAGGTCAGGACTGTAGCTCAGATACAGTAAGTGAGAAGAAAAGGGAGCGGCCACGATACCACACCAGGAGGAGTTCACAAGGATTGCTTTCCAGCATAGAAAATGCAGAGGCTGATGGCTCTGAGACCAAGAAGGAAAGTTTAAAGAAAAAATCTGGAAAAACAAAAAATAAAAGTGATTCTCTTGAAGGTAAACGGAAGGATGTCCAGCCAGAAAGCCAAAGCCATGGGGTGTCTTCTCAAGTAGATGAAAGTAAGAATCTGTCGGGGATGAATGAAAGTGAATTAAGCAGTGAAGTCAGCACAGATGCAGCACTGATGTCTGCACCATCTGATGTGAAAAATCAAGTGCTGCTTGCAGGTGCTGATGAAGCTGAGGGGTCTGCCAGCTCAAGGACTTCTCCCAGTACTCAGAATGTGAGCGTGGAACAAAGCAAAGCTGGTGTGTTGCCAGAATCTTTCAGTGACCCACGTGTGTCTGATGAAGTTTTGAAAGGAGATGAAAATAAATGCATTGAAAAGCAAAGCTCTGTGGAACAGCATTCGAGTGTTCAGCCTGAGAACGTACAAGGAGCAAACACTTCAGGTAGTGACCTCTCCTCTTTGCAAATGCAGGACTGTCAGCACAAGAGAAGCAAAAGGGTGAGAAAAGCCAAGAGCTGCGACTGCTGCTCGAAAAGAGTGAAGCAGCAAACATCACTCAGTGAGTCAAAAAGTGAGGATCCTCGTGAGCTGATTGAGCCTCAGGCCACACCAGTGCAGATGGCTGTCAGTACAGCAGAGGTGTCTGGCAGCTCGAATCTGGAGGAGAGCTTGTCCATCACACCTTGTGCCATGAGCACACCGCTGCCTCCTGCTAAGGAGTCCGGTATGTTGAGCTTGGAAAGAGAGAGAACGGGTGAAGACAACCTGCAAGGAAATTCTGGTGTTATGAAGGAAGAGGCAGAGAATCCAGCACACACAGCAGGTGAAGTCAGTGATCCTGTAGTGGAAATAAAAGTGAAAGAAGAGGTTGATGGGAACGACAGAGCTGAGCAGTGTGTGTCTGTGTCTGAGTGTGCTTCGGATGAGCCCAGCGACAGCTCTGTGGCTGCAGGGGATCAAAGTGAAGAGAAGGCAGCTGTAGAAAAGGAAGAAGAAAGCCAGCATGGGGAAATGGAGGAGGTCCCTGAGGCTGATGGTAGCAAACCTGAGACAAAACAGATGGATGAGCTGGAAGGCAATCGGGACGGCAAGGAGGAAGCTGAGAACGCTCTGGAAGAAGTTTGCATTACTCCAGATAACGAGATGAGAGAGGAACTGCTGGAAGCTGAAATCACAGTGCCTGAGAATGTGGCTGTAGGCAACAAAGATGTAGTAGTAGAAAATAAGAGTGCGGATTCGCCTCAGAAGCCAGAAGGCCTGGATTCTTTCACCTCGGTCAATGGGAGCCCCAGCGGTGTGCAGGCACGCTGCACGTGGTCTCCTTCAGCTTCCCCATCCACCAGCATTTTGAAGAGAGGTGTAAAAAGGCACCACGAGGACGATTCCTTGTCACCTGCTAATAAG
Seq C2 exon
ATTCGTCGGGTCTCTTTTGCCAATCCCATCTATCAGGAAGGACTGGCTGACGACATAGACAGGAGAAGTCCTGTCATTAGATCCCATTCTTCACCGTCTTCACGAAGTCTTAAAATCTTATCTAATATTCAGACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012484-'38-45,'38-44,41-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.976 C2=0.457
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]