BtaEX6010290 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000019781 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:73490617-73503379:-
Coord C1 exon
chr2:73503173-73503379
Coord A exon
chr2:73501780-73501896
Coord C2 exon
chr2:73490617-73491157
Length
117 bp
Sequences
Splice sites
3' ss Seq
CTATGTCCCTCTGGTTGTAGGGT
3' ss Score
8.43
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGTGAGGGCTGCCGAGGAGGCCGCATCCACGCTGGCCAGTTCCATCCACCCAGAGCAGTGCATCAAAGTGCTGTGCCCCATCGTCCAGACAGCTGACTACCCCATCAACCTGGCCGCCATCAAGATGCAGACCAAAGTTGTTGAGAGGATCGCCAAGGAGTCCTTGCTGCAGCTCCTCGCAGACATCATCCCAGGCCTGCTGCAG
Seq A exon
GGTTACGACAACACCGAGAGCAGCGTGCGCAAGGCCAGCGTGTTTTGCTTAGTGGCAATTTATTCCGTAATCGGAGAAGAGTTGAAACCTCACCTGGCACAGCTTACGGGGAGCAAG
Seq C2 exon
ATGAAGCTGCTCAACTTATACATAAAGAGGGCGCAGACCACGAACAGCAACAGCAGCTCCTCCTCTGATGTCTCCACCCACAGCTAATGCAACGCCAGAATCTCTGTGTAGCCCTGGAAGCAATCGGTGGTGCCTCAGAGACCTCCCCTCCACTCCCCCTCCAACCCCCCATCGGCTGCCCAGTCAGTACCAGGAGGCCCGCAAATATTTATTACAATCAGTATTTTGATCCCTTCCAGCTTTTGTGTAGAATCCTACTGGTATTGAATGTAAGGGAAGCAAGGCCTGTATTTCATCTTCCTACAGAACAAAACAAAAGGAGTAAGAGAAGAGCCATACTCAAACCGTCTCATCCAGCCTGCTGAGGTTGTAAAACCGTGTGTGTGGGGTGCAGTTCTTAAAAGTCAGAGCTCTCTAGCTGATACATGGTAGAAAGTAGCGTTTTCTCTTCAGTTAATAACAGGTTTGAGGAGGTTGTATTGAGCTGTGTTTCTCTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019781-'62-60,'62-59,63-60=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.643
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PD(43.6=63.8),PF0298517=HEAT=PU(19.4=8.7)
A:
PF0298517=HEAT=PD(74.2=59.0)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCAGAGCAGTGCATCAAAGT
R:
GCATTAGCTGTGGGTGGAGAC
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]