DreEX0021919 @ danRer10
Exon Skipping
Gene
ENSDARG00000010280 | clasp1a
Description
cytoplasmic linker associated protein 1a [Source:ZFIN;Acc:ZDB-GENE-081104-520]
Coordinates
chr9:38475636-38482014:+
Coord C1 exon
chr9:38475636-38475842
Coord A exon
chr9:38476945-38477061
Coord C2 exon
chr9:38480106-38482014
Length
117 bp
Sequences
Splice sites
3' ss Seq
AAGCGTGTGTCTGTCTGCAGGGC
3' ss Score
8.57
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGTGAGGGCGGCTGAAGAAGCTGCTTCTACACTGGCAGGTTCCATCCACCCAGAGCAGTGCATAAAAGTGTTGTGCCCCATCGTCCAGACTGCAGACTATCCTATCAACCTTGCTGCTATTAAGATGCAGACTAAAGTGGTCGAGCGCATCACCAAGGAGTCCCTACATCAGCTGCTGCCAGACATCATCCCTGGCCTCTTACAA
Seq A exon
GGCTATGATAACACGGAAAGTAGCGTCCGCAAGGCCAGTGTCTTCTGTCTGGTGGCCATTTACTCTGTGATTGGTGAGGAGCTGAAGCCACACTTGGCCCAGCTCACAGGGAGCAAG
Seq C2 exon
ATGAAGTTGCTAAATCTGTATATTAAGAGGGCCCAGACCACCAACAGCAACAGCAGCAGTTCTTCAGACGTGTCCTCTCACAGCTAGCCGGATCTGCGCTAATCAGTGCCCTTTACATGTGCATTTGGGAACATAGTTGTGCCTCCTCCTGACATCCTTTTTTTATTTGCTTCATCGCAATCTTCCTGGAATTTTTGTTTTCCAGAGAGAGAAATGTTGCTCGCTGCAATCAAGACTTTTCATCCAACACCTGAAAACCTCTCCCAGTTTGGTCTTTCATGATCTTTCCATCCGTGGAACATTGAATGTAAAGGGTTTCTGATTGAGAAAACATGGGAACCGATCTTCCGTAATTGGCATTGAATCTTTAATCGGAGCAAACAAGCTTTCTGAAGGGGTTGTTCGTTGAATACATTGATGAGTAATAACTTATTCATGTTTGCATATGGTGTTAAAGGTTTGGTTGAGTTGTTTTTAAAAGGGCACAGTTGGGTTAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000010280_CASSETTE8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.637
Domain overlap (PFAM):
C1:
PF127172=Cnd1=FE(35.2=100),PF0298517=HEAT=PU(19.4=8.7)
A:
PF127172=Cnd1=PD(10.0=48.7),PF0298517=HEAT=PD(74.2=59.0)
C2:
PF102744=ParcG=PD(20.2=79.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTACACTGGCAGGTTCC
R:
AAGAACTGCTGCTGTTGCTGT
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]