GgaEX1015612 @ galGal3
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
NA
Coordinates
chr7:27657655-27662402:-
Coord C1 exon
chr7:27662196-27662402
Coord A exon
chr7:27659760-27659876
Coord C2 exon
chr7:27657655-27657998
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTCTTGTTTCCTAGGGT
3' ss Score
10.32
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTCGTCAGAGCTGCTGAGGAAGCTGCTTCTACCCTGGCAAGCTCCATCCACCCTGAGCAATGCATCAAGGTGCTTTGCCCTATCATTCAGACTGCAGATTATCCAATTAATCTAGCTGCCATCAAGATGCAGACAAAGGTCATTGAGAGGATTTCCAAGGAATCATTGCACCAACTCCTTCCTGATATTATTCCTGGATTGTTACAG
Seq A exon
GGTTACGATAATACAGAGAGCAGTGTCCGTAAAGCTAGCGTATTTTGCCTAGTGGCAATTTATTCAGTAATTGGTGAAGAACTGAAACCTCATCTCGCACAGCTCACAGGAAGCAAG
Seq C2 exon
ATGAAGCTACTAAACTTGTACATAAAGAGGGCCCAAACTACCAACAGCAACAGCAGTTCCTCTTCAGATGTTTCAACGCACAGTTAATGGAGATATGTGGACATATGTGTAGACTTAGAAGCAATCAACGGTGCCTCTCAGAGACCTTTCTGCTACTCTTCACTGGCGCACTTCATCAGCTAAAGGAGGCCATGCAGATATTTATTGCAATCAGTATTCTAGTCCCTTAAAGCTTTTATGTAAAACCTTACTGGTATTGAATGTAAAGGAAGCAAGGTCTGTGTTGCAGTCTTCATTAAAAGTGAACAACAGAAAGCCATACTTAAACATATTGTATAGCCTGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645-'47-58,'47-57,48-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.786
Domain overlap (PFAM):
C1:
PF127172=Cnd1=FE(35.8=100)
A:
PF127172=Cnd1=PD(10.0=48.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCCATCAAGATGCAGAC
R:
GCAGAAAGGTCTCTGAGAGGC
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]