MmuEX6026848 @ mm10
Exon Skipping
Gene
ENSMUSG00000064302 | Clasp1
Description
CLIP associating protein 1 [Source:MGI Symbol;Acc:MGI:1923957]
Coordinates
chr1:118600378-118609497:+
Coord C1 exon
chr1:118600378-118600584
Coord A exon
chr1:118602365-118602481
Coord C2 exon
chr1:118606908-118609497
Length
117 bp
Sequences
Splice sites
3' ss Seq
GCTCCCCCTTGGCTCTCTAGGGT
3' ss Score
9.22
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGTGAGAGCGGCCGAGGAAGCTGCATCCACGCTAGCCAGCTCAATCCACCCAGAGCAGTGCATCAAAGTGCTGTGTCCAATCATCCAGACAGCCGACTACCCCATCAACCTGGCTGCTATCAAGATGCAGACAAAGGTGGTGGAGAGGATCACCAAGGAGTCCTTGCTGCAGCTCCTCGTCGACATCATCCCCGGCCTGCTGCAG
Seq A exon
GGTTACGACAACACCGAGAGCAGTGTACGGAAAGCCAGTGTGTTTTGCTTAGTGGCAATCTATTCCGTAATCGGAGAAGATCTGAAACCTCACCTCGCACAGCTCACGGGGAGCAAG
Seq C2 exon
ATGAAGCTGCTGAACTTATATATAAAGAGGGCCCAGACTACCAACAGCAACAGCAGCTCTTCCTCTGATGTGTCCACACACAGCTAGTGGCCGTGCCAGTCTGTGCAGAACACACATTGGTGGTGCCTCTGAGAAGCTCCATCAGTTGCCCAGTCCATTCAAGGAGGCCGCACATAATTTATTACAATCAGTATTTTGGTCCCTTCCAGCTTTTGTGTAGAATTTTGCTGGTATTGAATGTAACGGAAGCAAGGCCTGGGGACTGAGAAATGAAGAGCCATACTTGCACGTGTCTGCACCACCTGCTGACATCACCAAACCATGGAGGGCACAGCTCTTAGAATCCAGAGCTCTCTAGCCAGTGCTTGGTACACAGTAGCATATTTTTCAGTCCATACAGACTTGGGGGTGGTTTGGGGTATTGCTGTGTGTTCTTTATGCTTATGTTCTTAGAGTATGGTCAGATGGGACAAGACCCCCTCCTGTCTTCTACATGACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000064302-'110-95,'110-92,112-95
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.645
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PD(43.6=63.8),PF0298517=HEAT=PU(19.4=8.7)
A:
PF0298517=HEAT=PD(74.2=59.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCATCAACCTGGCTGCTATC
R:
GGGCAACTGATGGAGCTTCTC
Band lengths:
256-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types