HsaEX6015336 @ hg38
Exon Skipping
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr2:121337776-121348718:-
Coord C1 exon
chr2:121348512-121348718
Coord A exon
chr2:121347038-121347154
Coord C2 exon
chr2:121337776-121340947
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTCCCTTCTGGCTCTCTAGGGT
3' ss Score
9.66
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGTGAGAGCGGCTGAGGAGGCTGCGTCCACACTGGCCAGTTCCATCCACCCGGAGCAGTGCATCAAGGTGCTCTGCCCCATCATCCAGACGGCCGACTACCCCATCAACCTTGCTGCCATCAAGATGCAGACCAAAGTCGTCGAGAGGATCGCAAAGGAGTCATTGCTGCAGCTCCTTGTCGACATCATCCCAGGCTTGCTGCAG
Seq A exon
GGTTATGACAACACCGAAAGTAGTGTGCGTAAGGCCAGCGTGTTTTGCTTAGTGGCAATTTATTCCGTAATCGGAGAAGACCTGAAACCTCACCTTGCACAGCTCACAGGGAGCAAG
Seq C2 exon
ATGAAGCTACTAAACTTATACATAAAGAGGGCCCAGACCACCAACAGCAACAGCAGCTCCTCCTCCGATGTCTCCACGCACAGCTAATGGCAGTACCTGTCTCTTGTGTAGACCTAGAAGCAATCGGTGGTGCCTCTCAGAGACCTTTCCCCACCCCCTTCATCGGCTGCCCAGTCAGTACAAGGAGGCCCACAAATATTTATTACAATCAGTATTTTGGTCCCTTCCAGCTTTTCTGTAGAATCTTACTGGTATTGAATGTAAAGGAAGCAAGGCCTGTATTGCAGTCTTCATACAAAACAAAAGGAATAAGAACAGAAAAGAGCCATACTGAAACATGTCTTGTACAGCCTGCTGAGATGGCGAAACCCTGTGTGTGGGGTGCAGTTTTTAAAAATCAGAGCGCTCTAGCCACTACTTGGTAGAAAGTAGCATTTTTTTTTTCAGTTAATAACATATTTGGGGGTGGGGTGGGGTGTTACTTTGTGTTCTTCCTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.696
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PD(43.0=62.3)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCATTGCTGCAGCTCCTT
R:
TTGTGGGCCTCCTTGTACTGA
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains