HsaEX6015336 @ hg19
Exon Skipping
Gene
ENSG00000074054 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:17088]
Coordinates
chr2:122095352-122106294:-
Coord C1 exon
chr2:122106088-122106294
Coord A exon
chr2:122104614-122104730
Coord C2 exon
chr2:122095352-122098523
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTCCCTTCTGGCTCTCTAGGGT
3' ss Score
9.66
5' ss Seq
AAGGTATGT
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGGTGAGAGCGGCTGAGGAGGCTGCGTCCACACTGGCCAGTTCCATCCACCCGGAGCAGTGCATCAAGGTGCTCTGCCCCATCATCCAGACGGCCGACTACCCCATCAACCTTGCTGCCATCAAGATGCAGACCAAAGTCGTCGAGAGGATCGCAAAGGAGTCATTGCTGCAGCTCCTTGTCGACATCATCCCAGGCTTGCTGCAG
Seq A exon
GGTTATGACAACACCGAAAGTAGTGTGCGTAAGGCCAGCGTGTTTTGCTTAGTGGCAATTTATTCCGTAATCGGAGAAGACCTGAAACCTCACCTTGCACAGCTCACAGGGAGCAAG
Seq C2 exon
ATGAAGCTACTAAACTTATACATAAAGAGGGCCCAGACCACCAACAGCAACAGCAGCTCCTCCTCCGATGTCTCCACGCACAGCTAATGGCAGTACCTGTCTCTTGTGTAGACCTAGAAGCAATCGGTGGTGCCTCTCAGAGACCTTTCCCCACCCCCTTCATCGGCTGCCCAGTCAGTACAAGGAGGCCCACAAATATTTATTACAATCAGTATTTTGGTCCCTTCCAGCTTTTCTGTAGAATCTTACTGGTATTGAATGTAAAGGAAGCAAGGCCTGTATTGCAGTCTTCATACAAAACAAAAGGAATAAGAACAGAAAAGAGCCATACTGAAACATGTCTTGTACAGCCTGCTGAGATGGCGAAACCCTGTGTGTGGGGTGCAGTTTTTAAAAATCAGAGCGCTCTAGCCACTACTTGGTAGAAAGTAGCATTTTTTTTTTCAGTTAATAACATATTTGGGGGTGGGGTGGGGTGTTACTTTGTGTTCTTCCTCCTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000074054-'70-69,'70-68,71-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.786
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PD(43.0=62.3),PF0298517=HEAT=PU(19.4=8.7)
A:
PF0298517=HEAT=PD(74.2=59.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTCATTGCTGCAGCTCCTT
R:
TTGTGGGCCTCCTTGTACTGA
Band lengths:
243-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)