RnoEX0021471 @ rn6
Exon Skipping
Gene
ENSRNOG00000002376 | Clasp1
Description
cytoplasmic linker associated protein 1 [Source:RGD Symbol;Acc:1310970]
Coordinates
chr13:34576543-34582203:+
Coord C1 exon
chr13:34576543-34576749
Coord A exon
chr13:34578604-34578720
Coord C2 exon
chr13:34582117-34582203
Length
117 bp
Sequences
Splice sites
3' ss Seq
GTTCCCCCTTGACTCTCTAGGGT
3' ss Score
9.93
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTGGTGAGAGCAGCTGAGGAAGCTGCGTCCACACTAGCCAGCTCAATCCACCCGGAGCAGTGCATCAAAGTGCTGTGTCCAATCATCCAGACAGCAGACTACCCCATCAACCTGGCTGCCATCAAGATGCAGACAAAAGTGGTGGAGAGGATTACCAAGGAGTCCTTGCTGCAGCTCCTTGTTGACATCATCCCCGGCCTGCTGCAG
Seq A exon
GGTTACGACAACACTGAGAGCAGTGTACGGAAAGCCAGCGTGTTTTGCTTAGTGGCAATCTATTCCGTAATCGGAGAAGATCTGAAACCTCACCTCGCACAGCTCACGGGGAGCAAG
Seq C2 exon
ATGAAGCTGCTGAACTTATATATAAAGAGGGCCCAGACTACCAACAGCAACAGCAGCTCCTCTTCTGACGTGTCTACACACAGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002376_CASSETTE5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
PF136461=HEAT_2=PD(43.6=63.8),PF0298517=HEAT=PU(19.4=8.7)
A:
PF0298517=HEAT=PD(74.2=59.0)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTAGCCAGCTCAATCCACC
R:
AGACACGTCAGAAGAGGAGCT
Band lengths:
251-368
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]