GgaEX1015612 @ galGal4
Exon Skipping
Gene
ENSGALG00000011645 | CLASP1
Description
cytoplasmic linker associated protein 1 [Source:HGNC Symbol;Acc:HGNC:17088]
Coordinates
chr7:25583430-25589192:-
Coord C1 exon
chr7:25588986-25589192
Coord A exon
chr7:25586550-25586666
Coord C2 exon
chr7:25583430-25584788
Length
117 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTCTTGTTTCCTAGGGT
3' ss Score
10.32
5' ss Seq
AAGGTATGG
5' ss Score
9.26
Exon sequences
Seq C1 exon
GTCGTCAGAGCTGCTGAGGAAGCTGCTTCTACCCTGGCAAGCTCCATCCACCCTGAGCAATGCATCAAGGTGCTTTGCCCTATCATTCAGACTGCAGATTATCCAATTAATCTAGCTGCCATCAAGATGCAGACAAAGGTCATTGAGAGGATTTCCAAGGAATCATTGCACCAACTCCTTCCTGATATTATTCCTGGATTGTTACAG
Seq A exon
GGTTACGATAATACAGAGAGCAGTGTCCGTAAAGCTAGCGTATTTTGCCTAGTGGCAATTTATTCAGTAATTGGTGAAGAACTGAAACCTCATCTCGCACAGCTCACAGGAAGCAAG
Seq C2 exon
ATGAAGCTACTAAACTTGTACATAAAGAGGGCCCAAACTACCAACAGCAACAGCAGTTCCTCTTCAGATGTTTCAACGCACAGTTAATGGAGATATGTGGACATATGTGTAGACTTAGAAGCAATCAACGGTGCCTCTCAGAGACCTTTCTGCTACTCTTCACTGGCGCACTTCATCAGCTAAAGGAGGCCATGCAGATATTTATTGCAATCAGTATTCTAGTCCCTTAAAGCTTTTATGTAAAACCTTACTGGTATTGAATGTAAAGGAAGCAAGGTCTGTGTTGCAGTCTTCATTAAAAGTGAACAACAGAAAGCCATACTTAAACATATTGTATAGCCTGCTGAAATCTTGGAAATATGTTTAGGTTAGCATTCCAAAAGAGTCAAAAAACCTGGATATGCGTAAAAGTCAAACAACTCTTGGTTTAGTTCATACCCAGTTTTGGTTTCTTTGCGCTGGTTACTGCTCTTTCCCTGCGGCTGCAACCATTCTGGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011645_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (disopred):
C1=0.000 A=0.000 C2=0.643
Domain overlap (PFAM):
C1:
PF127172=Cnd1=FE(35.6=100)
A:
PF127172=Cnd1=PD(9.9=48.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCCATCAAGATGCAGAC
R:
GCAGAAAGGTCTCTGAGAGGC
Band lengths:
247-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]