BtaEX6014129 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000888 | SPTA1
Description
Bos taurus spectrin, alpha, erythrocytic 1 (elliptocytosis 2) (SPTA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206588]
Coordinates
chr3:11188008-11189400:+
Coord C1 exon
chr3:11188008-11188129
Coord A exon
chr3:11188656-11188788
Coord C2 exon
chr3:11189302-11189400
Length
133 bp
Sequences
Splice sites
3' ss Seq
GGATTACTTTCCTGTTACAGAGG
3' ss Score
6.78
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
AATGTACTGGATACGGCAGAAAGGCTGGGAGACAAGGCGGCCGTGGGGCGAGAGGAGATCCAGGACAGGCTTGATCAGCTTGTTCAACACTGGGACCAGCTCAAAGAGTTGACCAAGGCTCG
Seq A exon
AGGGATTCAGTTGGGAGAATCCCTAGAATACTTGGAATTCATGGAGAATGCTGAGGAGGAGGAAGCTTGGATTAGTGAAAAGGAAGCTCTAGTTGCCCAAGGGGATTCTGGAGACACTTTGGCTGCTATTCAG
Seq C2 exon
AGCTTACAAAAGAAGCTCGAAGCTTTGGAGAATGACTTTGCTGTCCATGAGATTCGAGTGCAAAATGTGTGTGCTCAAGGAGAAGACATCCTGAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000888-'41-42,'41-41,42-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.030
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(38.1=100)
A:
PF0043516=Spectrin=PD(5.7=13.3),PF0043516=Spectrin=PU(34.0=80.0)
C2:
PF0043516=Spectrin=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATACGGCAGAAAGGCTG
R:
TCAGGATGTCTTCTCCTTGAGCA
Band lengths:
210-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]