DreEX0074850 @ danRer10
Exon Skipping
Gene
ENSDARG00000019231 | spna2
Description
spectrin alpha 2 [Source:ZFIN;Acc:ZDB-GENE-051113-60]
Coordinates
chr21:13100019-13106446:+
Coord C1 exon
chr21:13100019-13100140
Coord A exon
chr21:13106132-13106264
Coord C2 exon
chr21:13106348-13106446
Length
133 bp
Sequences
Splice sites
3' ss Seq
GTTGGGTTTGCTGGTTTTAGTGG
3' ss Score
3.58
5' ss Seq
CAGGTATGA
5' ss Score
9.46
Exon sequences
Seq C1 exon
TCTGTGTTGGAGACTGGGAAGAAGCTGTCTGACGACAACACCATTGGACAGGAGGAGATCCAGCAGAGACTGGCCCAGTTTGTGGAGCACTGGAGGGAGCTGAAGGATCTGGCTGCTGCACG
Seq A exon
TGGGCAGAGGCTTGAAGAGTCGCTGGAATACCAGCAGTTTGTGGCGAACGTGGAAGAAGAGGAAGCCTGGATCAACGAGAAACTGAACCTGGTCGGAAGTGAAGATTACGGTGATACTCTGGCAGCTGTGCAG
Seq C2 exon
GGCTTGCTGAAGAAACATGAAGCATTTGAAACTGATTTTACTGTGCACAGGGACCGTGTGAATGATGTGTGTTCCAATGGAGATGAACTCGTTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019231-'53-62,'53-61,54-62
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.091
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(38.1=100)
A:
PF0043516=Spectrin=PD(5.7=13.3),PF0043516=Spectrin=PU(34.3=80.0)
C2:
PF0043516=Spectrin=FE(30.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTGTTGGAGACTGGGAAGA
R:
TTTAACGAGTTCATCTCCATTGGA
Band lengths:
218-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]