RnoEX0085734 @ rn6
Exon Skipping
Gene
ENSRNOG00000015396 | Sptan1
Description
spectrin, alpha, non-erythrocytic 1 [Source:RGD Symbol;Acc:621714]
Coordinates
chr3:8589784-8591563:+
Coord C1 exon
chr3:8589784-8589905
Coord A exon
chr3:8590290-8590422
Coord C2 exon
chr3:8591465-8591563
Length
133 bp
Sequences
Splice sites
3' ss Seq
CCTCCCCCTTCCATGATCAGGGG
3' ss Score
9.24
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GGTGTCCTGGACACGGGGAAGAAGCTGTCTGATGACAACACCATCGGGCAGGAGGAGATCCAGCAGCGTCTCGCACAGTTTGTGGAGCACTGGAAGGAACTGAAACAGCTAGCAGCTGCACG
Seq A exon
GGGCCAGCGGCTGGAGGAGTCCTTGGAGTATCAGCAGTTTGTGGCCAACGTGGAGGAGGAGGAGGCTTGGATCAATGAGAAGATGACCCTGGTGGCCAGCGAAGACTACGGGGACACTCTTGCTGCCATCCAG
Seq C2 exon
GGCTTACTGAAGAAACATGAAGCTTTTGAGACAGACTTCACTGTCCACAAGGATCGAGTGAATGATGTCTGTACTAATGGACAAGACCTCATTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015396-'76-81,'76-79,77-81
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=0.000 C2=0.242
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(38.1=100)
A:
PF0043516=Spectrin=PD(5.7=13.3),PF0043516=Spectrin=PU(34.3=80.0)
C2:
PF0043516=Spectrin=FE(30.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGGACACGGGGAAGAAG
R:
CTTCTTAATGAGGTCTTGTCCATTAG
Band lengths:
218-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]