BtaEX6046451 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015327 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 [Source:HGNC Symbol;Acc:HGNC:11273]
Coordinates
chr11:99167835-99170143:+
Coord C1 exon
chr11:99167835-99167956
Coord A exon
chr11:99168293-99168425
Coord C2 exon
chr11:99170045-99170143
Length
133 bp
Sequences
Splice sites
3' ss Seq
TAACTATTCCCTGCAATTAGGGG
3' ss Score
5.95
5' ss Seq
CAGGTCAGA
5' ss Score
7.41
Exon sequences
Seq C1 exon
GGTGTCCTGGACACTGGAAAGAAGCTGTCTGATGACAACACCATCGGGAAGGAGGAGATTCAGCAGCGCCTGGCGCAGTTCGTGGAGCACTGGAAGGAGCTGAAGCAGCTGGCAGCTGCCCG
Seq A exon
GGGCCAGCGGCTAGAAGAATCTTTGGAATATCAGCAGTTTGTAGCCAACGTGGAGGAGGAGGAAGCCTGGATCAATGAGAAGATGACCCTGGTGGCCAGTGAAGATTATGGAGACACTCTTGCTGCCATCCAG
Seq C2 exon
GGCTTGCTGAAGAAACACGAAGCCTTCGAGACGGACTTCACTGTCCACAAGGACCGAGTGAATGATGTCTGCACCAACGGCCAGGACCTGGTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015327-'47-52,'47-51,48-52=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.242
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(38.1=100)
A:
PF0043516=Spectrin=PD(5.7=13.3),PF0043516=Spectrin=PU(34.3=80.0)
C2:
PF0043516=Spectrin=FE(30.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCTGGACACTGGAAAGAAGC
R:
CCAGGTCCTGGCCGTTGG
Band lengths:
210-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]