MmuEX6100136 @ mm9
Exon Skipping
Gene
ENSMUSG00000057738 | Spna2
Description
spectrin alpha 2 [Source:MGI Symbol;Acc:MGI:98386]
Coordinates
chr2:29875948-29878058:+
Coord C1 exon
chr2:29875948-29876069
Coord A exon
chr2:29876711-29876843
Coord C2 exon
chr2:29877960-29878058
Length
133 bp
Sequences
Splice sites
3' ss Seq
CTCCCCCCTTCTATAATCAGGGG
3' ss Score
9.44
5' ss Seq
CAGGTCAGG
5' ss Score
7.2
Exon sequences
Seq C1 exon
GGTGTCCTGGACACTGGGAAGAAGCTGTCTGATGACAACACCATCGGGCAGGAGGAGATCCAGCAACGGCTTGCACAGTTTGTGGAGCACTGGAAGGAACTAAAGCAGCTGGCGGCTGCGCG
Seq A exon
GGGCCAGCGGCTAGAGGAGTCCTTGGAGTATCAGCAGTTTGTAGCCAACGTGGAAGAGGAGGAGGCTTGGATCAATGAGAAGATGACTCTGGTGGCCAGCGAAGACTATGGAGACACTCTTGCTGCTATCCAG
Seq C2 exon
GGCTTACTGAAGAAACACGAAGCTTTTGAGACAGACTTCACTGTCCACAAGGATCGGGTGAATGATGTCTGTACTAATGGACAAGACCTCATTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057738-'52-55,'52-53,53-55=AN
Average complexity
A_S
Mappability confidence:
89%=100=80%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.195 A=0.000 C2=0.242
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(38.1=100)
A:
PF0043516=Spectrin=PD(5.7=13.3),PF0043516=Spectrin=PU(34.3=80.0)
C2:
PF0043516=Spectrin=FE(30.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGGACACTGGGAAGAA
R:
TTCTTAATGAGGTCTTGTCCATTAGT
Band lengths:
218-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: