GgaEX6015080 @ galGal4
Exon Skipping
Gene
ENSGALG00000004719 | SPTAN1
Description
spectrin alpha chain, non-erythrocytic 1 [Source:RefSeq peptide;Acc:NP_001036003]
Coordinates
chr17:5175621-5176605:+
Coord C1 exon
chr17:5175621-5175742
Coord A exon
chr17:5176241-5176373
Coord C2 exon
chr17:5176507-5176605
Length
133 bp
Sequences
Splice sites
3' ss Seq
GCCTTTCTTTACCCATGCAGGGG
3' ss Score
9.03
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GGTGTTCTAGACACTGGCAAGAAGCTTTCAGATGATAACACAATTGGGAAGGAGGAGATACAGCAAAGACTGGCTCAGTTTGTGGACCACTGGAAAGAGTTAAAACAGCTGGCAGCTGCTCG
Seq A exon
GGGGCAGCGTCTGGAGGAGTCCCTGGAGTACCAACAGTTTGTAGCAAATGTTGAGGAAGAGGAGGCATGGATCAACGAGAAAATGACATTGGTAGCCAGTGAGGATTATGGAGACACACTTGCTGCTATCCAG
Seq C2 exon
GGCTTGCTGAAGAAGCATGAAGCATTCGAGACTGACTTTACTGTCCACAAAGACAGAGTGAATGATGTTTGCGCTAATGGAGAGGATCTCATTAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004719-'66-69,'66-68,68-69=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(38.1=100)
A:
PF0043516=Spectrin=PD(5.7=13.3),PF0043516=Spectrin=PU(34.3=80.0)
C2:
PF0043516=Spectrin=FE(30.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTCTAGACACTGGCAAGAAGC
R:
TTTTTAATGAGATCCTCTCCATTAGC
Band lengths:
218-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]