HsaEX6063272 @ hg19
Exon Skipping
Gene
ENSG00000197694 | SPTAN1
Description
spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) [Source:HGNC Symbol;Acc:11273]
Coordinates
chr9:131380266-131383535:+
Coord C1 exon
chr9:131380266-131380387
Coord A exon
chr9:131381150-131381282
Coord C2 exon
chr9:131383437-131383535
Length
133 bp
Sequences
Splice sites
3' ss Seq
TTCCTGTCTCCTGTAATTAGGGG
3' ss Score
8.42
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GGTGTCCTGGACACTGGCAAGAAGCTGTCCGATGACAACACCATCGGGAAAGAGGAGATCCAGCAGCGGCTGGCGCAGTTTGTGGAGCACTGGAAAGAGCTGAAGCAGCTGGCAGCTGCCCG
Seq A exon
GGGTCAGCGGCTGGAAGAGTCCTTGGAATATCAGCAGTTTGTAGCCAATGTGGAAGAGGAAGAAGCCTGGATCAATGAGAAAATGACCCTGGTGGCCAGCGAAGATTATGGCGACACTCTTGCCGCCATCCAG
Seq C2 exon
GGCTTACTGAAGAAACATGAAGCTTTTGAGACAGACTTCACCGTCCACAAGGATCGCGTGAATGATGTCTGCACCAATGGACAAGACCTCATTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197694-'51-51,'51-50,52-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.171 A=0.000 C2=0.242
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(38.1=100)
A:
PF0043516=Spectrin=PD(5.7=13.3),PF0043516=Spectrin=PU(34.3=80.0)
C2:
PF0043516=Spectrin=FE(30.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCTGGACACTGGCAAGAA
R:
TTCTTAATGAGGTCTTGTCCATTGGT
Band lengths:
218-351
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)