RnoEX6045465 @ rn6
Exon Skipping
Gene
ENSRNOG00000003537 | Spta1
Description
spectrin, alpha, erythrocytic 1 [Source:RGD Symbol;Acc:1305194]
Coordinates
chr13:92306841-92322615:+
Coord C1 exon
chr13:92306841-92306962
Coord A exon
chr13:92307969-92308101
Coord C2 exon
chr13:92322517-92322615
Length
133 bp
Sequences
Splice sites
3' ss Seq
GTCTAACTGCCTCATTACAGAGG
3' ss Score
5.71
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
AATGTGCTGGATACAGCAGAAAGCCTGAAAGACAAGGCTGCTGTAGGGAAAGAGGAGATCCAGGAGCGACTGGCTCAGTTTGTCCAGCATTGGGAAAAGCTCAAAGAATTGGCGAAGACACG
Seq A exon
AGGGGTGAATTTGGAGGAGTCTCTTCAGTATCTGCAATTCATGGAGAATGCAGAGGAAGAAGAAGCATGGCTGGGTGAAAAGGATGCACTGGTTAGCCGAGGAGATTCTGGAGACACACTGGCTGCTACTCAG
Seq C2 exon
AGTTTGCTAAAGAAGCACGAAGCTTTGGAGAATGACTTTGCTGTACACAAGAACCGGGTACAAGATGTTTGTGCACAAGGAGAAGACATTCTCAGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003537-'38-45,'38-42,39-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.133 C2=0.030
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(38.1=100)
A:
PF0043516=Spectrin=PD(5.7=13.3),PF0043516=Spectrin=PU(34.0=80.0)
C2:
PF0043516=Spectrin=FE(30.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGATACAGCAGAAAGCCTGA
R:
TGTCTTCTCCTTGTGCACAAACA
Band lengths:
203-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]