MmuEX6029386 @ mm10
Exon Skipping
Gene
ENSMUSG00000026532 | Spta1
Description
spectrin alpha, erythrocytic 1 [Source:MGI Symbol;Acc:MGI:98385]
Coordinates
chr1:174223261-174229340:+
Coord C1 exon
chr1:174223261-174223382
Coord A exon
chr1:174224428-174224560
Coord C2 exon
chr1:174229242-174229340
Length
133 bp
Sequences
Splice sites
3' ss Seq
TGCCAACCGCTCCATTACAGAGG
3' ss Score
4.92
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AATGTGCTGGATACGGCAGAAAGCCTGAGAGACAAGGCTGCTGTAGGGAAAGAGGAGATCCAGGAGCGGCTGGCTCAGTTTGTCCAACACTGGGAAAAGCTCAAAGAGTTGGCGAAGACCCG
Seq A exon
AGGGGTGAACTTGGAGGAGTCCCTCGAGTATCTGCAGTTCATGGAGAATGCAGAAGAAGAGGAAGCATGGCTGGGGGAGAAGTGTGCTCTGGTCAGTCGCGGGGATTCAGGAGACACACTGGCTGCTACTCAG
Seq C2 exon
AGTTTGCTAAAGAAGCATGAAGCTTTGGAGAATGACTTTGCTGTGCACAAGAACCGGGTACAAGATGTTTGTGCACAAGGAGAAGACATTCTTAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026532-'40-59,'40-50,44-59=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.022 C2=0.030
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(38.1=100)
A:
PF0043516=Spectrin=PD(5.7=13.3),PF0043516=Spectrin=PU(34.0=80.0)
C2:
PF0043516=Spectrin=FE(30.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAAGCCTGAGAGACAAGG
R:
TTAAGAATGTCTTCTCCTTGTGCACA
Band lengths:
202-335
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types