BtaEX6015138 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19873614-19875888:-
Coord C1 exon
chr3:19875805-19875888
Coord A exon
chr3:19874637-19874907
Coord C2 exon
chr3:19873614-19873780
Length
271 bp
Sequences
Splice sites
3' ss Seq
TAGTTTCCTGCTCCATGTAGAGG
3' ss Score
4.12
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
GCGTCGTGAGTCTGGGGTCTGGCTGGTGAGAAAGAGCCATCTTTAGCTGGAAGCAGGGAGGTGTGGGAAATACTGTTAATTGAG
Seq A exon
AGGACAGCAATATGTCCTCCCTCCCTGGGTGCCTTGGTTTGGCAGCTGCAACAGCAGCAGTGGAGTCTGAAGAAATTGCAGAGCTGCAACAGTCCGTGGTTGAGGAGCTGGGCATCTCAATGGAGGAGCTTCGACAGTTCATTGATGAAGAACTGGAAAAGATGGACTGTGTACAGCAGCGCAAGAAGCAACTAGCAGAGTTGGAGACTTGGGTAATACAAAAGGAATCTGAGGTGGCCCATGTTGACCAACTCTTTGATGATGCATCCAG
Seq C2 exon
GTGTTCCAATATTAGGGCAGTGACTAACTGTGAGTCTTTGGTGAAGGACTTTTATTCCAAACTGGGACTACAGTACCGGGACAGCAGCTCTGAAGATGAAGCTTCCCGGCCTACAGAAATAATTGAGATTCCTGATGAAGACGATGATGTCCTTAGTATTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098-'6-4,'6-1,10-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.421
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCGTGAGTCTGGGGTCTGG
R:
TCAATACTAAGGACATCATCGTCT
Band lengths:
244-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]