MmuEX0041858 @ mm10
Exon Skipping
Gene
ENSMUSG00000015697 | Setdb1
Description
SET domain, bifurcated 1 [Source:MGI Symbol;Acc:MGI:1934229]
Coordinates
chr3:95354542-95357200:-
Coord C1 exon
chr3:95357027-95357200
Coord A exon
chr3:95355934-95356202
Coord C2 exon
chr3:95354542-95354693
Length
269 bp
Sequences
Splice sites
3' ss Seq
TTCTTGTTCATCCTGCACAGGGC
3' ss Score
8.25
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
TTTCCCCTCCCCCGCCGTCTCTCCTTCAGTTTGCCTGGGTTTGGCAAGGCGGAGCCCTGGAGTAAAACCTGGGGTCGGGGTTGTGAGACGCGGCCCTTGCGGTCGGGCGCCAGAGTTGTGGGGAGGACGGACTGAGGTGCGCTGAGGCCGAGGTGGACCTGGGAGGCTTGGCTG
Seq A exon
GGCCAAAGCATGTCCTCCCTCCCTGGGTGCATGAGTTTGGCTGCAGCGCCAGCTGCAGCTGACTCTGCAGAGATTGCTGAGCTGCAGCAGGCGGTGGTTGAAGAGCTGGGTATCTCTATGGAGGAACTTCGTCAGTACATTGATGAGGAACTGGAAAAGATGGACTGCATACAGCAGCGCAAGAAGCAGCTCGCAGAGCTGGAGACGTGGGTACTACAGAAAGAGTCTGAAGTGGCTTATGTTGATCGGCTGTTTGATGATGCATCCAG
Seq C2 exon
GGAAGTGACTAACTGTGAGTCTTTGGTGAAGGATTTCTACTCTAAGCTGGGACTACAGTATCATGACAGTAGCTCTGAGGATGAAGCTTCCCGGCCCACAGAGATCATTGAGATTCCTGATGAAGATGATGATGTCCTCAGTATTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015697-'1-1,'1-0,4-1
Average complexity
S
Mappability confidence:
100%=67=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.419
Domain overlap (PFAM):
C1:
NA
A:
PF072276=DUF1423=PU(67.8=89.7)
C2:
PF072276=DUF1423=PD(31.3=69.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTCTCTCCTTCAGTTTGCC
R:
TGAGGACATCATCATCTTCATCAGG
Band lengths:
300-569
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types