RnoEX0079918 @ rn6
Exon Skipping
Gene
ENSRNOG00000021143 | Setdb1
Description
SET domain, bifurcated 1 [Source:RGD Symbol;Acc:1308370]
Coordinates
chr2:196524193-196527127:-
Coord C1 exon
chr2:196527029-196527127
Coord A exon
chr2:196525920-196526188
Coord C2 exon
chr2:196524193-196524344
Length
269 bp
Sequences
Splice sites
3' ss Seq
GTCTTGTTCTTCCCGCACAGGGC
3' ss Score
9.75
5' ss Seq
TAGGTGAGG
5' ss Score
7.65
Exon sequences
Seq C1 exon
GTTTTGGCGAGGCGGAGCCCTGGAGTAAAACCTGGGGTCGGTGTTGTGAGACCCGGCCCTTGCGGTTGGGAGCCGGAGCTGTGGGGCGGGCTGACTGAG
Seq A exon
GGCGAAAGCATGTCCTCCCTCCCTGGGTGCATGAGTTTGGCTGCAGCGCCAGCTGCGGCGGACTCTGCAGAGATTGCTGAGCTGCAGCAGGCAGTGGTTGAAGAGCTGGGTATCTCTATGGAGGAACTTCGTCAGTTCATCGATGAAGAACTGGAAAAGATGGACTGTATACAGCAGCGCAAGAAGCAGCTGGCAGAGCTGGAGACGTGGGTGCTGCAGAAGGAGTCTGAGGTGGCTTATGTTGATCGGCTGTTTGATGATGCATCTAG
Seq C2 exon
GGAAGTGACTAATTGTGAGTCTTTGGTGAAGGATTTCTACTCTAAGCTGGGATTACAGTATCATGACAGTAGCTCTGACGATGAAGCTTCCCAGCCTACAGAGATAATCGAGATTCCTGATGAAGATGATGATGTCCTCAGTATTGATTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021143_MULTIEX2-1/4=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.006 C2=0.500
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCTGGAGTAAAACCTGG
R:
TGAATCAATACTGAGGACATCATCA
Band lengths:
236-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]