DreEX6040645 @ danRer10
Exon Skipping
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22104616-22107958:-
Coord C1 exon
chr16:22107801-22107958
Coord A exon
chr16:22105475-22105707
Coord C2 exon
chr16:22104616-22104776
Length
233 bp
Sequences
Splice sites
3' ss Seq
GTTTTCTTTTTTTTTTCAAGTGC
3' ss Score
7.96
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
ATGACCAGTGAATTATCAAAATATTAAAAACAACTACATTACTAAAATGTCACGGATATAAGAGAAAACTTTAAACGCACTACCGTTTGTTTACCTGTCATTTGAGGCACGGCGGAAACGAGAAAAATCACAAAGGGCTGGAGGCGGCGACACGTTAG
Seq A exon
TGCATGGAAGTGGATGCAGGTTTAAACTCAGGGATGGAGATGGAGCTGGAACCAGAGTTGGAGGAGGAGTTAGGAGTGTCTTTGGATGAGCTGCGCAAGTGGATCGAGGAGCAGGTGGACAGCAGCGAGGCTGTGCAGAAGAGGAAAGCTGATCTGGAGCAGCTGCAGGAGTGGGTTGAGCAGCGTGAGAAGGAGGTTGCTGATATCGATGCTCTTTGCTCCAATGCCTCAGA
Seq C2 exon
GTCTGTGGTTCAGTGTGAAGCTCTGGTGAAGGAAGTGTACAGTAACATGGGTTTAGTGTATCGTGAAAGCAGCTCAGATGATGAGGGAGGCAAGGCAAACCCTTCTGAGGTCATTGAGATCGATGATGATGATGACGATGATGTCATTGCTGTGGGATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021-'4-9,'4-8,9-9=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.299 C2=0.508
Domain overlap (PFAM):
C1:
NA
A:
PF135141=AAA_27=PU(76.3=96.1),PF051497=Flagellar_rod=PU(73.6=83.1),PF141821=YgaB=PU(83.1=76.6),PF092786=MerR-DNA-bind=WD(100=68.8)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGAAAACTTTAAACGCACTACCG
R:
AACATCCCACAGCAATGACATCA
Band lengths:
260-493
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]