GgaEX1004445 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L3I9]
Coordinates
chr25:1732331-1733963:+
Coord C1 exon
chr25:1732331-1732394
Coord A exon
chr25:1732709-1732922
Coord C2 exon
chr25:1733926-1733963
Length
214 bp
Sequences
Splice sites
3' ss Seq
TGCGGTTCTGGGTGCAGCAGAAA
3' ss Score
1.18
5' ss Seq
GAGGTGGGT
5' ss Score
7.07
Exon sequences
Seq C1 exon
CCCCCGGCCCCTTCCTCAGCCTCCATCCCGGCTGTAGGGGTCGGGGCTGGGCCGTGGGGCCGAG
Seq A exon
AAATGGATTCCCAGGACATCAAAGAGCTGCAACAAGAAGTGATGGAGGAGATGGGAATCTCCATGGAGGAGCTGCAGGACATCATCAACGAGGAGCTGGAGAAGTCTGAGTACGTGAAGCAGAAGAAGCAGCAGCTGGAGGAGCTGGAGAAGTACGTGAAACAGAAGGAGGAAGAGGTGGCTCACGTTGACCGTCTCTTTGATGATGCTTGGAG
Seq C2 exon
GTGATACCAGTCCCAAAGTCGCCAAGGATCAGACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024051_MULTIEX2-1/3=C1-3
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.376 C2=0.933
Domain overlap (PFAM):
C1:
NA
A:
PF098244=ArsR=WD(100=95.8),PF126432=MazG-like=WD(100=63.4)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]