BtaEX6015147 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000098 | SETDB1
Description
SET domain, bifurcated 1 [Source:HGNC Symbol;Acc:HGNC:10761]
Coordinates
chr3:19853242-19855349:-
Coord C1 exon
chr3:19855194-19855349
Coord A exon
chr3:19853946-19854569
Coord C2 exon
chr3:19853242-19853358
Length
624 bp
Sequences
Splice sites
3' ss Seq
CTCTTGCATCTCGTTTTCAGGTC
3' ss Score
11.1
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
CTTGGAAGGCCAGCTTGCCCAATCTCGGAAGCAGGTAGCCAAAAAAAGCACATCTTTCCGGCCAGGATCTGTGGGCTCTGGTCATTCCTCCCCTACATCCCCTGCACTCAGTGAAAATGCCCCTGGTGGGAAACCTGGGATCAATCAGACATATAG
Seq A exon
GTCACCTTTAGGCTCCACAACCTCTGCCCCAGCACCCCCAGCTCCCCCAGCACCCCCAGCCTTCCATGGCATGCTGGAGCGGGCCCCTGCAGAGCCCTCCTACCGTGCCCCCATGGAGAAGCTTTTCTACTTACCTCATGTCTGCAGCTATACTTGTCTGTCTCGAGTCAGACCTATGAGAAGTGAGCAGTATCGGGGCAAGAACCCTCTGTTAGTCCCACTACTCTATGACTTTCGGCGAATGACAGCCCGGCGCCGAGTAAACCGCAAGATGGGCTTTCATGTTATCTATAAGACACCCTGTGGCCTCTGCCTTCGGACAATGCAGGAGATTGAGCGTTACCTTTTTGAGACTGGCTGTGACTTCCTCTTCCTGGAGATGTTCTGTTTGGATCCATATGTTCTTGTGGACCGAAAGTTTCAGCCCTATAAGCCTTTTTACTATATTTTGGACATCACCTATGGGAAGGAAGACGTTCCTCTATCCTGCGTTAACGAGATTGACACGACTCCCCCACCTCAGGTGGCCTACAGCAAGGAACGGATCCCGGGCAAGGGTGTTTTCATTAACACAGGCCCTGAGTTTCTTGTCGGCTGTGACTGCAAAGATGGGTGCCGGGACAA
Seq C2 exon
GTCCAAGTGTGCCTGCCATCAGCTAACTATCCAGGCTACAGCCTGCACCCCAGGAGGCCAAATCAACCCCAACTCTGGCTACCAATACAAGAGACTAGAAGAATGTCTGCCCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000098-'27-21,'27-20,28-21=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0142914=MBD=WD(100=35.9),PF0503311=Pre-SET=PU(49.6=27.3)
C2:
PF0503311=Pre-SET=FE(33.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGGAAGGCCAGCTTGC
R:
CCTGTGGGCAGACATTCTTCT
Band lengths:
273-897
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]