GgaEX1004444 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:H9L3I9]
Coordinates
chr25:1740272-1741964:+
Coord C1 exon
chr25:1740272-1740421
Coord A exon
chr25:1741025-1741612
Coord C2 exon
chr25:1741848-1741964
Length
588 bp
Sequences
Splice sites
3' ss Seq
TGCCCCTCTCCCCGTGGCAGCTT
3' ss Score
8.3
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GTGCTCTGACAGTCTGCTGGCCCAGTCGAGGAAGCAGGTGGCCAAGAAGAGCACATCCTTCCGTCCCGGCTCGGGGCAGTCGTCGCCTTCACCGCCTGTGCTGAGCGATGCACCTCCGGCAGGAAGGGCAGCTGCAGCCCAGCAGCATCG
Seq A exon
CTTCCCCGGCGGGCCGGCGCAGCCCTTCCACGGCATGATGGACCGCGTGCCCAACGAGCCGTCGTACCGCGCGCCGCTGGAGAAGCTCTTCTACCTCCCCCACGTCTGCAGCTACGCCTGCCTGTCCCGCGTGCGGCCCATGCGCAGCGACCAGTACCGCAGCAAGAACCCTCTGCTCATCCCTCTGCTCTACGACTTCAGGAGGATGACGGCCCGCCGGAGGGTGAACCGCAAGATGGGCTTCCACGTCATCTACAAGACGCCGTGCGGGCTCTGCCTGCGCAGCATGGCCGAGATCGAGCGCTACCTCTTCGAGACCGACTGCGACTTCCTCTTCCTGGAGATGTTCTGCCTGGATCCCTATGTCCTGGTGGACCGCAAGTTCCAGCCCTACAAACCCTACTATTACATCGCCGACATCACCAAGGGCCGCGAGGACGTGCCGCTGTCCTGCGTCAACGAGATCGACAGCACGCCGCCGCCGCAGGTGGCCTACAGCAAGGAGCGCATCCCCGGCAAGGGGGTCTTCATCAACACCGGGTGGGAGTTCCTCGTGGGCTGCGACTGCAGGGACGGCTGCAGGGACAG
Seq C2 exon
GTCGAAGTGTGCCTGTCACCAGCTGACGGTCCAAGCGACCGGCTGCACCCCGGGAGGGCAGATCAACCCCAACTCGGGGTACCAGCACAAGAGGCTGGAGGAGTGCCTCCCAACTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000024051_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.961 A=0.158 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0142914=MBD=WD(100=35.9),PF0503311=Pre-SET=PU(49.6=27.3)
C2:
PF0503311=Pre-SET=FE(33.9=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTCTGACAGTCTGCTGG
R:
ACTCCTCCAGCCTCTTGTGC
Band lengths:
254-842
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]