DreEX6040652 @ danRer10
Exon Skipping
Gene
ENSDARG00000099021 | setdb1b
Description
SET domain, bifurcated 1b [Source:ZFIN;Acc:ZDB-GENE-061013-224]
Coordinates
chr16:22098966-22101667:-
Coord C1 exon
chr16:22101379-22101667
Coord A exon
chr16:22099495-22099847
Coord C2 exon
chr16:22098966-22099082
Length
353 bp
Sequences
Splice sites
3' ss Seq
ACTTTGTACCTCTCTTTCAGATG
3' ss Score
11.61
5' ss Seq
CAAGTTAGT
5' ss Score
4.22
Exon sequences
Seq C1 exon
GCTCTTCCTTTTGCAGTCTGGACCCGTGCACACGTTGACACCAATCACACCAGCCCCTCAAACTGTGCAGACAGCTATTTCAACCTACACAAATGAGCGCGTACCCCAGGAGCCGTCATACCAGGCCCCAAATGACCGACTCTTCTACCTTACACACAACTGCTCCCCAGAATGTCTTAAGCGCATCAGACCCACCCGTCCAAACCTGCATCGAGGACGCAACCCACTCCTTACACCATTGCTCTATGAATTTCGCCGCATGACTGGCCGCAGACGCCTTAACCGAAAG
Seq A exon
ATGTCATTCCACGTCATCTACAAGTCCCCGTGTGGCTTGAGTCTAAGGAATATGACGGAGATCCAGCGCTACCTCTTCCAGACTCAATGTGACTTCATCTTCCTGGAGATGTTCTGTCTGGACCCCTATGTGCTGGTGGACCGCCGATTCCAACCTCAGAGGCCCTTCTACTTCATTAGAGACATCACGAGTGGTCGTGAAGACATTCCCCTGTCCTGTGTGAATGAGATTGACAACACGCCACCACCCAGCGTGGCCTATAGCAAAGAGAGGATCCCAGAAGATGGAGTATATATTAATACCAGTGCAGACTTCCTGGTGGGCTGTGACTGCACCGATGGATGCAGAGACAA
Seq C2 exon
ATCCAAGTGCTCGTGTCATCAGCTGACTCTACAGGCTACAGGATGTACTCCAGGTGGGCAGATCAACCCCAACGCTGGATACCATTATAAGAGACTGGATGAATGTCTCCCTACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000099021-'21-24,'21-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.433 A=0.025 C2=0.000
Domain overlap (PFAM):
C1:
PF0142914=MBD=PU(34.7=26.8)
A:
PF0142914=MBD=PD(62.7=39.8),PF0503311=Pre-SET=PU(49.6=48.3)
C2:
PF0503311=Pre-SET=FE(33.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACACGTTGACACCAATCA
R:
GTATCCAGCGTTGGGGTTGAT
Band lengths:
345-698
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]