RnoEX0079909 @ rn6
Exon Skipping
Gene
ENSRNOG00000021143 | Setdb1
Description
SET domain, bifurcated 1 [Source:RGD Symbol;Acc:1308370]
Coordinates
chr2:196507794-196510519:-
Coord C1 exon
chr2:196510361-196510519
Coord A exon
chr2:196509085-196509753
Coord C2 exon
chr2:196507794-196507910
Length
669 bp
Sequences
Splice sites
3' ss Seq
ATCTTGCTTTTCATTTGCAGATC
3' ss Score
11.78
5' ss Seq
TAAGTGAGT
5' ss Score
6.43
Exon sequences
Seq C1 exon
AAGCTTAGAAAGCCAGCTTGCTCAATCACGGAAGCAAGTAGCCAAAAAGAGCACATCATTCCGACCAGGATCTGTGAGTTCTGGCCATTCCTCCCCTACTTCGCCCACACTCAGTGAAAATGTACCCCCTGGGAAAATTGGAATGAACCAGACATACAG
Seq A exon
ATCACCTTCAGCCTCTGTAACATCTACCCCAGCACCTGCAGCCCCTTCTGGGCCTCCAGCCCCTCCAGGGCCTCTTGCTCCTCCTGGACCACCGGCCCCTCCAGCTTTCCACGGCATGTTAGAGCGGGCACCAGCTGAGCCCTCCTATCGTGCCCCTATGGAGAAGCTTTTCTATTTACCTCATGTCTGCAGTTACACTTGTTTGTCCCGGATTAGACCCATGAGGAATGAACAATATCGGGGCAAAAACCCTCTACTGGTCCCACTATTGTATGACTTCCGGAGGATGACAGCACGTCGCAGAGTTAACCGCAAGATGGGCTTCCATGTAATCTATAAGACACCCTGTGGTCTCTGCCTTCGGACGATGCAGGAAATAGAGCGCTACCTTTTTGAGACTGGCTGTGACTTCCTGTACCTGGAGATGTTCTGTTTGGATCCATATGTCCTTGTTGACAGAAAGTTCCAGCCCTTTAAACCTTTTTACTATATTTTGGACATCACCTATGGCAAAGAAGATGTTCCCCTGTCCTGTGTTAATGAGATTGACACAACTCCCCCACCCCAGGTGGCCTACAGCAAGGAACGCATTCCTGGCAAGGGTGTTTTCATTAACACAGGCCCTGAATTTCTGGTTGGCTGTGACTGCAAGGATGGGTGTCGGGATAA
Seq C2 exon
ATCCAAGTGTGCCTGCCATCAGCTCACTGTCCAGGCCACAGCCTGTACCCCAGGGGGTCAGATCAACCCTAGCTCCGGCTACCAGCACAAAAGACTAGAAGAGTGTCTGCCCACAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021143-'27-19,'27-17,31-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.214 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0142914=MBD=WD(100=33.5),PF0503311=Pre-SET=PU(49.6=25.4)
C2:
PF0503311=Pre-SET=FE(33.9=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAAGCCAGCTTGCTCAATCA
R:
CCTGTGGGCAGACACTCTTCT
Band lengths:
270-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]