BtaEX6018679 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021024 | MACF1
Description
microtubule-actin crosslinking factor 1 [Source:HGNC Symbol;Acc:HGNC:13664]
Coordinates
chr3:107275860-107279404:-
Coord C1 exon
chr3:107279238-107279404
Coord A exon
chr3:107277814-107277970
Coord C2 exon
chr3:107275860-107275977
Length
157 bp
Sequences
Splice sites
3' ss Seq
CAAAATGTCTCCCTTGACAGAGA
3' ss Score
6.87
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
Exon sequences
Seq C1 exon
GAGCTCAATTTGGAAATGGAAGACCAACAGGAGAATCTGGATACTCTTGAGCACCTAGTCACTGACCTGAGCTCCTGTGGCTTTGCTCTGGACCTGTCCCAGCACCAACACAGGGTGCAGAACCTCAAAAAGGACTTCTCGGAGCTACAGAAGACAATTAAAGAAAG
Seq A exon
AGAGGAAGATGCGTCATCTTGCCAGGAGCAATTAGATGAATTCCGGAAGCTGGTTAGGATTTTCCAGAAATGGCTGAAGGAAACTGAAGGGAATATTCCACCTGCAGAGACTTTCATGAGTACTAAAGAGCTGGAAAAGCAGATTGAACACCTGAAG
Seq C2 exon
GATCTCCTAGATGACTGGACAAGTAAGGGGACTTTGGTAGAGGAAATCAATTGTAAAGGTACTTCTTTAGAAAATCTCATCATGGAGATCACAGCACCTGATTCTCAAGCCAAGACCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021024-'59-62,'59-61,60-62=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.302 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACCAACAGGAGAATCTGGA
R:
GGCTTGAGAATCAGGTGCTGT
Band lengths:
258-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]