GgaEX0004827 @ galGal3
Exon Skipping
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5669085-5670653:+
Coord C1 exon
chr23:5669085-5669251
Coord A exon
chr23:5669956-5670112
Coord C2 exon
chr23:5670536-5670653
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGAAACCTTTTCACTCGCAGAGA
3' ss Score
8.94
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAGCTGAATGTGGAGATGGGGCAGCACCAGGAGGACCTGGCTGCCCTGGAGCAGCTGGCTGTGGAGCTGGGTGCCAGCGGCTTTGTGCCCGGCGCTGCTGCACAACAGGAAAAGCTGCAGAATCTGAAGGAGGAGTTCCTGCAGCTGCAGAAGGTGGCAAAGGAGAG
Seq A exon
AGAAAGGGACGCCTCATCCTGCCAGGAGCAGCTGGATGAGTTTCGGAGGTTGGTGGCAGCCCTGCGGAGGTGGCTGAAGGACAGCGAGGGCAAAGTGCCACCCGTGGACACCTCGCTGGGCACCCAGGAGCTGCAGCGGCGCAAGCAGAGGGTCCAG
Seq C2 exon
GAGCTGCTGGAGGAGTGGTCAGGGAAGGGCCCGCAGGTGGAGGAGCTCAGCCACAGGGGGACCCTCCTGGAGAACCTGATTGTGGAGATCACAGCCCCTGACAGTCAGACCAAGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'56-55,'56-54,57-55
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.358 C2=0.175
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(55.0=100)
A:
PF0043516=Spectrin=PD(3.0=5.7)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGAATGTGGAGATGGGGCAG
R:
ATCAGGTTCTCCAGGAGGGTC
Band lengths:
244-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]