GgaEX0004827 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5352672-5354240:+
Coord C1 exon
chr23:5352672-5352838
Coord A exon
chr23:5353543-5353699
Coord C2 exon
chr23:5354123-5354240
Length
157 bp
Sequences
Splice sites
3' ss Seq
TGAAACCTTTTCACTCGCAGAGA
3' ss Score
8.94
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAGCTGAACGTGGAGATGGGGCAGCACCAGGAGGACCTGGCTGCCCTGGAGCAGCTGGCTGTGGAGCTGGGTGCCAGCGGCTTTGTGCCCGGCGCTGCTGCACAACAGGAAAAGCTGCAGAATCTGAAGGAGGAGTTCCTGCAGCTGCAGAAGGTGGCAAAGGAGAG
Seq A exon
AGAAAGGGACGCCTCATCCTGCCAGGAGCAGCTGGATGAGTTTCGGAGGTTGGTGGCAGCCCTGCGGAGGTGGCTGAAGGACAGCGAGGGCAAAGTGCCACCCGTGGACACCTCGCTGGGCACCCAGGAGCTGCAGCGGCGCAAGCAGAGGGTCCAG
Seq C2 exon
GAGCTGCTGGAGGAGTGGTCAGGGAAGGGCCCGCAGGTGGAGGAGCTCAGCCACAGGGGGACCCTCCTGGAGAACCTGATTGTGGAGATCACAGCCCCTGACAGTCAGACCAAGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693-'78-86,'78-84,80-86
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.358 C2=0.200
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=FE(55.0=100)
A:
PF0043516=Spectrin=PD(3.0=5.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGAACGTGGAGATGGG
R:
ATCAGGTTCTCCAGGAGGGTC
Band lengths:
247-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]