BtaEX6026450 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000009786 | SCIN
Description
scinderin [Source:HGNC Symbol;Acc:HGNC:21695]
Coordinates
chr4:20153135-20168306:+
Coord C1 exon
chr4:20153135-20153333
Coord A exon
chr4:20162968-20163122
Coord C2 exon
chr4:20168081-20168306
Length
155 bp
Sequences
Splice sites
3' ss Seq
ACTGTCATTTGCTCTTTTAGGAA
3' ss Score
12.07
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATGGCCCAGGGGCTGTACCACGAGGAGTTCGCCCGCGCGGGCAAGCGGGCGGGGCTGCAGGTCTGGAGAATTGAGAAGCTGGAGCTGGTGCCGGTGCCCGAGAGCGCGTATGGCAACTTCTACGTCGGGGATGCCTACCTGGTGCTCCACACGACGCAGGCCAGCCGGGGCTTCACCTACCGCCTGCACTTCTGGCTGG
Seq A exon
GAAAGGAGTGTACTCAGGATGAAAGCACAGCAGCTGCCATCTTTACTGTTCAGATGGATGACTATTTGGGTGGCAAACCTGTGCAGAACAGAGAACTTCAAGGCTATGAGTCTACGGATTTTGTTGGCTACTTTAAAGGAGGTCTGAAATACAAG
Seq C2 exon
GCTGGCGGTGTGGCGTCTGGACTCAATCATGTGCTTACAAATGACTTGACTGCTCAGAGGCTCCTGCATGTGAAAGGTCGGAGAGTCGTCAGGGCCACGGAAGTTCCCCTAAGCTGGGACAGTTTCAACAAGGGTGACTGCTTCATCATTGACCTTGGCACTGTAAGTGTTATGCTTACCTGGAGATGTCTAGAGGAAGGTAAATTGTCTTCAGATCAAATCAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000009786-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(49.4=61.2)
A:
PF0062617=Gelsolin=PD(49.4=78.8)
C2:
PF0062617=Gelsolin=PU(77.4=63.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCGTATGGCAACTTCTACGT
R:
TGCCAAGGTCAATGATGAAGCA
Band lengths:
255-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]