MmuEX6080795 @ mm10
Exon Skipping
Gene
ENSMUSG00000002565 | Scin
Description
scinderin [Source:MGI Symbol;Acc:MGI:1306794]
Coordinates
chr12:40124567-40134183:-
Coord C1 exon
chr12:40133910-40134183
Coord A exon
chr12:40127881-40128035
Coord C2 exon
chr12:40124567-40124728
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGGGTCTGTGTTGGTTTCAGGAA
3' ss Score
8.6
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ACCGGTCATCGGGCTCTTCCTTGGGCTCAGGGCACGGATCAAGTCCTCGGCTCGCTCGGCCAGCATCGCGGCACCATGGCGCAGGAGCTGCAGCACCCCGAGTTCGCGCGCGCAGGCCAGCAGGCTGGGCTGCAGGTGTGGAGGGTCGAGAAGCTGGAACTGGTACCGGTGCCCCAGGGTGCCTATGGTGACTTTTACGTCGGAGACGCCTACCTGGTGCTGCACACCACCAAGTCCAGCAGGGGCTTCTCCTACCGCCTGCATTTCTGGCTGG
Seq A exon
GAAAGGAGTGTTCCCAGGATGAGAGCACAGCGGCTGCCATCTTTACGGTCCAGATGGACGACTATTTGGGTGGCAAGCCAGTCCAGAGCAGAGAGCTTCAAGGCTATGAGTCGACTGATTTTGTGGGCTATTTCAAAGGCGGTCTGAAGTACAAG
Seq C2 exon
GCTGGAGGTGTGGCTTCTGGACTAAACCATGTCCTCACCAATGATCTGACTGCGAAAAGACTTCTGCACGTGAAGGGTCGGAGAGTGGTCAGAGCCACTGAAGTTCCCCTCAGCTGGGAGAGCTTCAACAAGGGCGACTGCTTCATCATTGACCTTGGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000002565-'0-2,'0-0,2-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(49.4=61.2)
A:
PF0062617=Gelsolin=PD(49.4=78.8)
C2:
PF0062617=Gelsolin=PU(34.2=48.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGTGCCTATGGTGACTT
R:
TCAATGATGAAGCAGTCGCCC
Band lengths:
253-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types