GgaEX6019122 @ galGal3
Exon Skipping
Gene
ENSGALG00000010770 | ADSV_CHICK
Description
NA
Coordinates
chr2:26728868-26735563:+
Coord C1 exon
chr2:26728868-26729171
Coord A exon
chr2:26733756-26733910
Coord C2 exon
chr2:26735402-26735563
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTTATATTATCTTGTTTCAGGGA
3' ss Score
9.59
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
GGAGGAGAGAAGGCCGGGCCGCTGCCCTGCGCTCCGCCCGGGGGCGGCCGCAGCGCTATAAAGGCGATGGTGCAGAACAGCGCTCACTTGGCTCCGTGCAGCGCTATGGCTCCCGAGCGGCACCCGCCGGCCTTTGAGGGCGCCGGGCAGGAGAGCGGGCTGCAGGTGTGGCGCGTGGAGCGGCTGGAGTTGGTGCCGGTACCGCCCAGCCGCCATGGGGACTTCTTCGTCGGCGACGCCTATCTGGTGCTGCACACCGTCCGCCGCGGAGCCGCCGTCGCCTACCGCCTGCACTACTGGCTCG
Seq A exon
GGAAAGAATGTACCCAGGATGAGAGTACAGCTGCAGCTATCTTCACTGTTCAACTGGATGACTACTTAGGAGGAAAGCCTGTACAGAGCAGAGAAATTCAAGGATATGAATCTAATGAGTTTGTGAGCTATTTCAAAGGAGGAATTAAATACAAG
Seq C2 exon
GCAGGTGGTGTTGCCTCTGGATTTAATCACGTTGTTACTAATGATCTGAGTGCCCAGAGGCTTCTCCATATCAAGGGCCGGAGAGTTGTGAGAGCCACAGAAGTCCCCTTGACTTGGGCCAGCTTCAACAAAGGAGATTGTTTCATTATTGACCTTGGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010770-'0-2,'0-0,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.273 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(49.4=40.2)
A:
PF0062617=Gelsolin=PD(49.4=78.8)
C2:
PF0062617=Gelsolin=PU(51.0=48.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGAACAGCGCTCACTTG
R:
AAATCCAGAGGCAACACCACC
Band lengths:
258-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]