RnoEX6028570 @ rn6
Exon Skipping
Gene
ENSRNOG00000004498 | Scin
Description
scinderin [Source:RGD Symbol;Acc:735034]
Coordinates
chr6:60045137-60054279:-
Coord C1 exon
chr6:60054081-60054279
Coord A exon
chr6:60048131-60048285
Coord C2 exon
chr6:60045137-60045298
Length
155 bp
Sequences
Splice sites
3' ss Seq
AGGGTCTGTGTTGGTTTCAGGAA
3' ss Score
8.6
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
ATGGCTCAGGAGCTGCAGCACCCCGAGTTCGCGCGCGCAGGAAAACAGGCGGGGCTGCAAGTGTGGAGGGTCGAGAAGCTGGAACTGGTACCGGTGCCCCAGGGTGCCTATGGTGACTTTTACGTCGGAGACGCCTACCTGGTGTTGCACACCACCAAGTCGAGCAGGGGCTTCTCCTACCGCCTGCACTTCTGGCTGG
Seq A exon
GAAAGGAGTGTTCCCAGGATGAGAGCACGGCAGCGGCCATCTTCACGGTCCAGATGGACGACTATTTGGGCGGCAAGCCGGTGCAGAGCAGAGAGCTTCAAGGCTATGAGTCGACTGATTTTGTGGGCTATTTCAAAGGCGGTCTGAAGTACAAG
Seq C2 exon
GCCGGAGGTGTGGCTTCTGGACTAAACCATGTCCTCACCAATGACCTGACGGCGAAAAGGCTTCTGCATGTGAAGGGTCGGAGAGTGGTCAGGGCCACAGAAGTTCCCCTCAGCTGGCAGAGCTTCAACAAGGGCGACTGCTTCATCATTGACCTTGGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004498-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(49.4=61.2)
A:
PF0062617=Gelsolin=PD(49.4=78.8)
C2:
PF0062617=Gelsolin=PU(34.2=48.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGGGTGCCTATGGTGACTT
R:
TCAATGATGAAGCAGTCGCCC
Band lengths:
253-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]