GgaEX6019122 @ galGal4
Exon Skipping
Gene
ENSGALG00000010770 | SCIN
Description
Adseverin [Source:UniProtKB/Swiss-Prot;Acc:Q5ZIV9]
Coordinates
chr2:26871392-26878002:+
Coord C1 exon
chr2:26871392-26871610
Coord A exon
chr2:26876195-26876349
Coord C2 exon
chr2:26877841-26878002
Length
155 bp
Sequences
Splice sites
3' ss Seq
CTTATATTATCTTGTTTCAGGGA
3' ss Score
9.59
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACTTGGCTCCGTGCAGCGCTATGGCTCCCGAGCGGCACCCGCCGGCCTTTGAGGGCGCCGGGCAGGAGAGCGGGCTGCAGGTGTGGCGCGTGGAGCGGCTGGAGTTGGTGCCGGTACCGCCCAGCCGCCATGGGGACTTCTTCGTCGGCGACGCCTATCTGGTGCTGCACACCGTCCGCCGCGGAGCCGCCGTCGCCTACCGCCTGCACTACTGGCTCG
Seq A exon
GGAAAGAATGTACCCAGGATGAGAGTACAGCTGCAGCTATCTTCACTGTTCAACTGGATGACTACTTAGGAGGAAAGCCTGTACAGAGCAGAGAAATTCAAGGATATGAATCTAATGAGTTTGTGAGCTATTTCAAAGGAGGAATTAAATACAAG
Seq C2 exon
GCAGGTGGTGTTGCCTCTGGATTTAATCACGTTGTTACTAATGATCTGAGTGCCCAGAGGCTTCTCCATATCAAGGGCCGGAGAGTTGTGAGAGCCACAGAAGTCCCCTTGACTTGGGCCAGCTTCAACAAAGGAGATTGTTTCATTATTGACCTTGGAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010770-'0-3,'0-0,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(49.4=61.2)
A:
PF0062617=Gelsolin=PD(49.4=78.8)
C2:
PF0062617=Gelsolin=PU(34.2=48.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGTTGGTGCCGGTAC
R:
TTTGTTGAAGCTGGCCCAAGT
Band lengths:
253-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]